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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTCCGTGGAGCACTATACCCAGGTTAAGCTTAAGAAGCGCGGTTCCGACACCAAGTACCTTGCCACCGTCCTAGCCATCGGCACAGAGTGCGACATTGgtgcgcccgctctccccatccctgccactgtctccattgtttatttcttactcttagttttttttcttcttattgtgatgttgggtttgtccattgtagtcgtgaaaatcggatgcatagtaatttctttattgttttcttag

Basic information

species Zea mays
transcript GRMZM5G887390_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G887390_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g50880.1 (Oryza sativa), 5'ss of exon 1
CACTCCGTGGAGCACTATACCCAGGTTAAGCTTAAGAAGCGCGGTTCCGACACCAAGTACCTTGCCACCGTCCTAGCCATCGGCACAGAGTGCGACATTGgtgcgcccgctctccccatccctgccactgtctccattgtttatttcttactcttagttttttttcttcttattgtgatgttgggtttgtccattgtagtcgtgaaaatcggatgcatagtaatttctttattgttttcttag
||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||| || || |||||||||||||||  |     | ||||| || ||||  |   || |||||||  || |||   || | || ||         |||||  |  |     | |||| ||   |    || || |     ||||                       
CACTCCGTGGAGCACTACACCCAGGTCAAGCTTAAGAAGCGCGGCTCCGACACCAAGTACCTGGCCACGGTCCTCGCCATTGGGACGGAGTGCGACATTGgtatga----tttccccttctctgctgcaacctgcattgttctttcctt---ctcaattgttgca------attgtagtact-----tatccaatgc--ttcctaagattgctccaatag-----------------------

upper sequence: GRMZM5G887390_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ16952 (Selaginella moellendorffii), 5'ss of exon 1
CACTCCGTGGAGCACTATACCCAGGTTAAGCTTAAGAAGCGCGGTTCCGACACCAAGTACCTTGCCACCGTCCTAGCCATCGGCACAGAGTGCGACATTGgtgcgcccgctctccccatccctgccactgtctccattgtttatttcttactcttagttttttttcttcttattgtgatgttgggtttgtccattgtagtcgtgaaaatcggatgcatagtaatttctttattgttttcttag
||||| ||||||||  | || ||||| ||| | |||||||| || || |||||||||||||| |||| ||| || ||||| || || ||||| |||||||||| |       |  |||  | |   |  || |  ||   || ||| |     ||  || ||| |  | | |                                                                       
CACTCGGTGGAGCATCACACACAGGTGAAGATCAAGAAGCGAGGCTCGGACACCAAGTACCTGGCCAACGTTCTTGCCATTGGAACCGAGTGTGACATTGgtgag-------tttccaagctt-ttatggtgtttatgacttcttttt---gtttgcttctttgttctatcag----------------------------------------------------------------------