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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTAATTAACGAGGAAGTCATGCTAGGCACCCTCTGGTCTTCTCGTCTCCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactgtcaaactatctgaatgaagttcgctatactgtaacaatgtgtataatgctgctgtccagaacatacatgttctggcactctgcttcaagt...

Basic information

species Zea mays
transcript GRMZM5G884316_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78077326|gb|DV505760.1|DV505760
EST:     CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG                         GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCCAAG
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
EST: gi|78111844|gb|DV530241.1|DV530241
EST:     CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG                         GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
EST: gi|76918443|gb|DV167297.1|DV167297
EST:     CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG                         GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
EST: gi|89762405|gb|DY690005.1|DY690005
EST:     CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG                         GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
EST: gi|76011704|gb|DT938874.1|DT938874
EST:     CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG                         GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
EST: gi|71431444|gb|DR812494.1|DR812494
EST:     CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG                         GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
EST: gi|76021372|gb|DT948542.1|DT948542
EST:     CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG                         GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
EST: gi|78105804|gb|DV524222.1|DV524222
EST:     CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG                         GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
EST: gi|74232780|gb|DT640694.1|DT640694
EST:     CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG                         GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
EST: gi|76911871|gb|DV164475.1|DV164475
EST:     CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG                         GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
EST: gi|78120002|gb|DV538386.1|DV538386
EST:     CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG                         GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
EST: gi|148971070|gb|EE021911.2|EE021911
EST:     CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG                         GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
EST: gi|71439008|gb|DR820058.1|DR820058
EST:     CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTG                         GCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG
genomic: CCAACCAACCACTACCGGCGTGTGGATGATAGCAGGTTATCTGTTGCGTGgtatgcactg ... tatctttcagGCATAAATCGTCCCTGTTGGTGAGCTGTTCCAAAGACTCAAAG