Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31911267|gb|CD651839.1|CD651839EST: CGCTCCTCATGGCCATCAAAGGGCCAGATCTACGACGTCACCCAGAGCAG AATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
genomic: CGCTCCTCATGGCCATC-AAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|60340782|gb|DN207755.1|DN207755EST: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAG AATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
genomic: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|4646507|gb|AI491646.2|AI491646EST: CCGCTCCTCATGGCCATCAAGGGCCAGATTTACGACGTCACCCAGAGCAG AATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
genomic: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|211122173|gb|FL463029.1|FL463029EST: CCGCTCCTCATGGCCATCAAGGSCCAGATCTACGACGTCACCCAGAGCAG AATGTTCTATGGACYTGGCGGACYTTACGCCCTGTTCGCCGGCAAAGATSC
genomic: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|32805639|gb|CD957873.1|CD957873EST: GATCTACGACGTCACCCAGAGCAG AATGTTCTATGGACCCGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
genomic: GATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|60347796|gb|DN214769.1|DN214769EST: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAG AATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
genomic: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|101391073|gb|EB817470.1|EB817470EST: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAG AATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
genomic: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|211479773|gb|FL191755.1|FL191755EST: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAG AATGTTCTATGGACCTGGCGGACCT
genomic: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCT
EST:
gi|211020500|gb|FL191505.1|FL191505EST: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAR AATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
genomic: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|148987509|gb|EE031367.2|EE031367EST: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAG AATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
genomic: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|211353843|gb|FL191723.1|FL191723EST: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAG AATGTTCTATGGACCTGGCGGACCTTACG
genomic: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACG
EST:
gi|211127597|gb|FL191533.1|FL191533EST: AAGGGCCAGATCTACGACGTCACCCAGAGCAG AATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
genomic: AAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|15079834|gb|BI388850.1|BI388850EST: GACGTCACCCAGAGCAG AATGTTCTATGGACCCGGCGGACCTTACGCCCTGTTCGCTGGCAAAGATGC
genomic: GACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|148990761|gb|EE032172.2|EE032172EST: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAG AATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
genomic: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|211346636|gb|FL191687.1|FL191687EST: AGATCTACGACGTCACCCAGAGCAG AATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
genomic: AGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|26557496|gb|CA829731.1|CA829731EST: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAG AATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
genomic: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|60338776|gb|DN205749.1|DN205749EST: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAG AATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
genomic: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|32805838|gb|CD958072.1|CD958072EST: GATCTCCGACGTCACCCAGAGCAG AATGTTCTATGGACCCGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
genomic: GATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|29543458|gb|CB603854.1|CB603854EST: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAG AATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
genomic: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|148944920|gb|EC890079.2|EC890079EST: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAG AATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
genomic: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|149106527|gb|EE188419.2|EE188419EST: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAG AATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
genomic: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|32808118|gb|CD960352.1|CD960352EST: GATCTACGACGTCACCCAGAGCAG AATGTTCTATGGACCCGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
genomic: GATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|148954008|gb|EC899401.2|EC899401EST: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAG AATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
genomic: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|148950410|gb|EC895977.2|EC895977EST: CCGCTCCTCATGGCCATCAAGGGCCAGATTTATGACGTCCCCCAGAGCAG AATGTTTTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
genomic: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|20208093|gb|BQ134182.1|BQ134182EST: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAG AATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
genomic: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|32830557|gb|CD970235.1|CD970235EST: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAG AATGTTCTATGGACCCGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
genomic: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|83278996|gb|DV943004.1|DV943004EST: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAG AATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
genomic: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
EST:
gi|148944919|gb|EC890078.2|EC890078EST: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAG AATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
genomic: CCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGC
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
274AGGTCTCCGAGGAGGACCTCCGCCAGTACGACGGCTCCGACCCTAAGAAGCCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGCCAGCAGAGCTCTAGCGAAGATGTCGTTCGAGCCACAGGACCTCACCGGC
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
272AGGTCTCCGAGGAGGACCTCCGCCAGTACGACGGCTCCGACCCTAAGAAGCCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGCCAGCAGAGCTCTAGCGAAGATGTCGTTCGAGCCACAGGACCTCACCGGC
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
226AGGTCTCCGAGGAGGACCTCCGCCAGTACGACGGCTCCGACCCTAAGAAGCCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGCCAGCAGAGCTCTAGCGAAGATGTCGTTCGAGCCACAGGACCTCACCGGC
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
246AGGTCTCCGAGGAGGACCTCCGCCAGTACGACGGCTCCGACCCTAAGAAGCCGCTCCTCATGGCCATCAAGGGCCAGATCTACGACGTCACCCAGAGCAGgtctgttcct ... ccctacgcagAATGTTCTATGGACCTGGCGGACCTTACGCCCTGTTCGCCGGCAAAGATGCCAGCAGAGCTCTAGCGAAGATGTCGTTCGAGCCACAGGACCTCACCGGC