1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCGGTGGACCGGGACCGCGGCCGCGCGCTCTTCTACTGGCTGACCGAGGCCGTCGGCGACGACGCGGCCGCCAAGCCCCTCGTGCTCTGGCTCAACGGAGgttagtcagtgacccctccacctgcagtcagagcttattagctcatttttttcatgcaataatcagcaatcatgtggttcctcgctcgtcctccgtggtc...
species | Zea mays |
transcript | GRMZM5G879749_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGTCGGCGACGACGCGGCCGCCAAGCCCCTCGTGCTCTGGCTCAACGGAG GTCCTGGATGCTCGTCGGTGGCGEST: gi|211537062|gb|FK968599.1|FK968599
genomic: CGTCGGCGACGACGCGGCCGCCAAGCCCCTCGTGCTCTGGCTCAACGGAGgttagtcagt ... gcactggcagGTCCTGGATGCTCGTCGGTGGCG
EST: CGTCGGCGACGACGCGGCCGCCAAGCCCCTCGTGCTCTGGCTCAACGGAG GTCCTGGATGCTCGTCGGTGGCGTATGGAGCGTCGGAGGAGATCGGCCCGTEST: gi|94479697|gb|EB708655.1|EB708655
genomic: CGTCGGCGACGACGCGGCCGCCAAGCCCCTCGTGCTCTGGCTCAACGGAGgttagtcagt ... gcactggcagGTCCTGGATGCTCGTCGGTGGCGTATGGAGCGTCGGAGGAGATCGGCCCGT
EST: CAAGCCCCTCGTGCTCTGGCTCAACGGAG GTCCTGGATGCTCGTCGGTGGCGTATGGAGCGTCGGAGGAGATCGGCCCGTEST: gi|101395266|gb|EB819563.1|EB819563
genomic: CAAGCCCCTCGTGCTCTGGCTCAACGGAGgttagtcagt ... gcactggcagGTCCTGGATGCTCGTCGGTGGCGTATGGAGCGTCGGAGGAGATCGGCCCGT
EST: CAAGCCCCTCGTGCTCTGGCTCAACGGAG GTCCTGGATGCTCGTCGGTGGCGTATGGAGCGTCGGAGGAGATCGGCCCGTEST: gi|71775053|gb|DR972931.1|DR972931
genomic: CAAGCCCCTCGTGCTCTGGCTCAACGGAGgttagtcagt ... gcactggcagGTCCTGGATGCTCGTCGGTGGCGTATGGAGCGTCGGAGGAGATCGGCCCGT
EST: GGCCGCCAAGCCCCTCGTGCTCTGGCTCAACGGAG GTCCTGGATGCTCGTCGGTGGCGTATGGAGCGTCGGAGGAGATCGGCCCGT
genomic: GGCCGCCAAGCCCCTCGTGCTCTGGCTCAACGGAGgttagtcagt ... gcactggcagGTCCTGGATGCTCGTCGGTGGCGTATGGAGCGTCGGAGGAGATCGGCCCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGTGGACCGGGACCGCGGCCGCGCGCTCTTCTACTGGCTGACCGAGGCCGTCGGCGACGACGCGGCCGCCAAGCCCCTCGTGCTCTGGCTCAACGGAGgttagtcagtgacccctccacctgcagtcagagcttattagctcatttttttcatgcaataatcagcaatcatgtggttcctcgctcgtcctccgtggtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcgctcg