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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTCTTAAACATGAAGATGCGGAGAACATAGGTTATGTGATACCGACTCCAGTTATTACACATTTCATTGAGGACTACAAAAATCTAGAGAATACACAGgtaatatgctcttttctgtaattactgggagtaattgttggttttattagcatgatcatgcatttgggtccacagtctacaactgttacaaaaataatgg...

Basic information

species Zea mays
transcript GRMZM5G877597_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G877597_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g50880.1 (Oryza sativa), 5'ss of exon 3
GTCTCTTAAACATGAAGATGCGGAGAACATAGGTTATGTGATACCGACTCCAGTTATTACACATTTCATTGAGGACTAC-AAAAATCTAGAGAATACACAGgtaatatgctcttttctgtaattactgggagtaattgttggttttattagcatgatcatg-catttgggtccacagtctacaactgttacaaaaataatgg
 ||||| |||||||||||||| ||||| ||||||||||||||||| || ||||||||||  ||||||||| | |||||  |||| ||| ||||||| |||||||| ||||| |      ||||| |  | |       ||   ||   | | ||||||||| |  ||          | ||  |   ||||     |   ||
-TCTCTCAAACATGAAGATGCAGAGAATATAGGTTATGTGATACCCACCCCAGTTATTATGCATTTCATTCAAGACTATGAAAAGTCTGGAGAATATACAGgtaa-atgctatacaacttaattgcatgaatatgccatttacttctattgtatgatcatggcccttcttcttttcttttagtataattacctctgtttggg

upper sequence: GRMZM5G877597_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA17G09970.1 (Glycine max), 5'ss of exon 3
GTCTCTTAAACATGAAGATGCGGAGAACATAGGTTATGTGATACCGACTCCAGTTATTACACATTTCATTGAGGACTACAAAAATC-TAGAGAATACACAGgtaatatgctcttttctg--taattactgggagtaattgtt----ggttttattagcatgatcatgcatttggg--tccacagtctacaac---tgttacaaaaataatgg----
 || || || ||||||||||||||||| ||||||||||| || || || |||||||| |  ||||| ||  |||| ||  | ||   | ||| ||| || ||||||||| |   | |    |||    | |   | | | ||    | |  ||| ||     |  |  | |||    |  |    ||   |    | || |  ||      |    
-TCCCTCAAGCATGAAGATGCGGAGAATATAGGTTATGTCATTCCAACGCCAGTTATCATGCATTTTATCCAGGATTATGAGAAGAATGGAGGATATACTGgtaatatggtagctacaaactaagatgtagatttcacttttacaagatgctatcagagcatttttagaattgaagttttatgcactgagatctttctttctcaatctgctgttag

upper sequence: GRMZM5G877597_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA01G16820.1 (Glycine max), 5'ss of exon 3
GTCTCTTAAACATGAAGATGCGGAGAACATAGGTTATGTGATACCGACTCCAGTTATTACACATTTCATTGAGGACTACAAAAATC-TAGAGAATACACAGgta----atatgctcttttctgtaattactgggagta-attgttggttttattagcatgatcatgcatttgggtccacagtctacaactgttacaaaaataatgg
 ||||||||||||||||||| |||||| ||||| ||||| ||||| || ||||||||   |||||| ||    |||||  ||||   | | | ||| |||||||    | | | | ||||   |  ||         | |   ||    ||  ||        || |||||       |    |    ||  |  | |   |||  
-TCTCTTAAACATGAAGATGTGGAGAATATAGGATATGTAATACCCACCCCAGTTATCCTACATTTTATCCGAGACTATGAAAAGAATGGGGCATATACAGgtatctaaaaggatgttttacttctttgtctatttcatacccttctccttcctaaagaagatat-catttactcttgct-cttgtgtctact-tagaggaaat--

upper sequence: GRMZM5G877597_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA05G01930.1 (Glycine max), 5'ss of exon 3
GTCTCTTAAACATGAAGATGCGGAGAACATAGGTTATGTGATACCGACTCCAGTTATTACACATTTCATTGAGGACTACAAAAATC-TAGAGAATACACAGgtaatatgctcttttctgtaattactgggagtaattgttggttttattag------catgatcat-----gcatttgggtccacagtctacaactgttacaaaaataatgg-------
 || || || ||||||||||||||||| ||||||||||| || || || |||||||| |  ||||| ||  |||| ||  | ||   | ||| ||| || ||||||||| |   |   | || ||   |  |||  | |   |||||  ||      | ||| |||     | |||  | |  |    ||   |   ||       ||   |       
-TCCCTCAAGCATGAAGATGCGGAGAATATAGGTTATGTCATTCCAACGCCAGTTATCATGCATTTTATCCAGGATTATGAGAAGAATGGAGGATATACTGgtaatatggtagcta--ggaacta--agatgtagatttcacttttacaagatgctacctgagcatttttagaattaagttttatgcactcagatctttctttctctatctgctgttag

upper sequence: GRMZM5G877597_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv17s0000g07900.t01 (Vitis vinifera), 5'ss of exon 3
GTCTCTTAAACATGAAGATGCGGAGAACATAGGTTATGTGATACCGACTCCAGTTATTACACATTTCATTGAGGACTACAAAAATC-TAGAGAATACACAGgtaatatgctcttttctgtaattactgggagtaattgttggttttattagcatgatcatgcatttgggtccacagtctacaactgttacaaaaataatgg----
 |||||||||||||||||||| ||||| ||||||||||| ||||| || ||||| || |  || || ||  | || ||  | ||   | ||| ||| || |||| | |  |   || ||   | |          ||| |  | || ||       |  || |     |   ||||| ||    |||    ||  |  |      
-TCTCTTAAACATGAAGATGCAGAGAATATAGGTTATGTCATACCAACACCAGTCATCAAGCACTTTATCCAAGATTATGAGAAGAATGGAGCATATACTGgta-tgtatttgattgtggcttcaactatttcggttgataatgttcttgttggatttttgaac---agcttacagtttatctttgtgcataacttccttatgat

upper sequence: GRMZM5G877597_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv14s0066g01660.t01 (Vitis vinifera), 5'ss of exon 3
GTCTCTTAAACATGAAGATGCGGAGAACATAGGTTATGTGATACCGACTCCAGTTATTACACATTTCATTGAGGACTACAAAAATC-TAGAGAATACACAGgtaatatgctcttttctgtaattactgggagtaattgttggtttta-ttagcatga-tcatgcatttgggtccacagtctacaactgttacaaaaataatgg
 || ||||||||||||||||  ||||| ||||||||||| ||||| || ||||||||||  || |||||   ||| ||  | ||   | | | ||| ||||||         | |  | |  |   |   |||   |||  ||||||  |  || || | |  |  ||      |   |||| |  ||||       |     
-TCCCTTAAACATGAAGATGTAGAGAATATAGGTTATGTCATACCAACGCCAGTTATTATGCACTTCATCCGGGATTATGAGAAGAATGGTGCATATACAGgtgcatcagagtgtagtcttgtgcttttcagtttgtgtctgttttaactctcacgagttactctctttatataattatctaaatgtgttcttg--ttggcta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91054928|gb|EB165346.1|EB165346
EST:     CAGTTATTACACATTTCATTGAGGACTACAAAAATCTAGAGAATACACAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCATTCT
genomic: CAGTTATTACACATTTCATTGAGGACTACAAAAATCTAGAGAATACACAGgtaatatgct ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCATTCT
EST: gi|94472958|gb|EB701916.1|EB701916
EST:     CAGTTATTACACATTTCATTGAGGACTACAAAAATCTAGAGAATACACAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCATTCT
genomic: CAGTTATTACACATTTCATTGAGGACTACAAAAATCTAGAGAATACACAGgtaatatgct ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCATTCT
EST: gi|78090489|gb|DV518863.1|DV518863
EST:     CAGTTATTACACATTTCATTGAGGACTACAAAAATCTAGAGAATACACAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCATTCT
genomic: CAGTTATTACACATTTCATTGAGGACTACAAAAATCTAGAGAATACACAGgtaatatgct ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCATTCT
EST: gi|91054929|gb|EB165347.1|EB165347
EST:     CAGTTATTACACATTTCATTGAGGACTACAAAAATCTAGAGAATACACAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCATTCT
genomic: CAGTTATTACACATTTCATTGAGGACTACAAAAATCTAGAGAATACACAGgtaatatgct ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCATTCT
EST: gi|78084750|gb|DV513143.1|DV513143
EST:     AAAAATCTAGAGAATACACAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCATTCT
genomic: AAAAATCTAGAGAATACACAGgtaatatgct ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCATTCT
EST: gi|88748255|gb|DY532396.1|DY532396
EST:     CAGTTATTACACATTTCATTGAGGACTACAAAAATCTAGAGAATACACAG                         GCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACGGCCTGCTCATTCT
genomic: CAGTTATTACACATTTCATTGAGGACTACAAAAATCTAGAGAATACACAGgtaatatgct ... tttctttcagGCTGCAATTGAGTACATTCATTCTTTATCAAGGGCACAGCCTGCTCATTCT