1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGAGGCCGGTCTCGCCGCCAGCGACGACGGAGACGCCGACTACGACTTTGCGGACCACGACTCCGACGACTCCGCGGAGCTCATCTCCCACAGACAGCAGgtgatctccggctcccggccgtgggtggtgcgtggcgtgtgtgagagtggatctgcttctgtacggtgaatgcggaaatggaggattgtgaatctaggcg...
species | Zea mays |
transcript | GRMZM5G876621_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGGACCACGACTCCGACGACTCCGCGGAGCTCATCTCCCACAGACAGCAG CAAAATTATAGTATATTGAGTGAAGTTGATATACAGCGGCGCCAAGAGGATEST: gi|149076667|gb|EE165310.2|EE165310
genomic: CGGACCACGACTCCGACGACTCCGCGGAGCTCATCTCCCACAGACAGCAGgtgatctccg ... tgtgccacagCAAAATTATAGTATATTGAGTGAAGTTGATATACAGCGGCGCCAAGAGGAT
EST: CGGACCACGACTCCGACGACTCCGCGGAGCTCATCTCCCACAGACAGCAG CAAAATTATAGTATATTGAGTGAAGTTGATATACAGCGGCGCCAAGAGGATEST: gi|211309741|gb|FL424544.1|FL424544
genomic: CGGACCACGACTCCGACGACTCCGCGGAGCTCATCTCCCACAGACAGCAGgtgatctccg ... tgtgccacagCAAAATTATAGTATATTGAGTGAAGTTGATATACAGCGGCGCCAAGAGGAT
EST: CGGACCACGACTCCGACGACTCCGCGGANCTCATCTCCCACAGACAGCAG CAAAATTATAGTEST: gi|89252989|gb|DY624775.1|DY624775
genomic: CGGACCACGACTCCGACGACTCCGCGGAGCTCATCTCCCACAGACAGCAGgtgatctccg ... tgtgccacagCAAAATTATAGT
EST: CGGACCACGACTCCGACGACTCCGCGGAGCTCATCTCCCACAGACAGCAG CAAAATTATAGTATATTGAGTGAAGTTGATATACAGCGGCGCCAAGAGGATEST: gi|211061876|gb|FL005131.1|FL005131
genomic: CGGACCACGACTCCGACGACTCCGCGGAGCTCATCTCCCACAGACAGCAGgtgatctccg ... tgtgccacagCAAAATTATAGTATATTGAGTGAAGTTGATATACAGCGGCGCCAAGAGGAT
EST: CGGAACACGACTCCGACGACTCCGCGGAGCTCATCTCCCACAGACAGCAG CAAAATTATAGTATATTGGAGTGA-GTTGATATACAGCGGCGC-AAGAAGAEST: gi|149084442|gb|EE173900.2|EE173900
genomic: CGGACCACGACTCCGACGACTCCGCGGAGCTCATCTCCCACAGACAGCAGgtgatctccg ... tgtgccacagCAAAATTATAGTATATTG-AGTGAAGTTGATATACAGCGGCGCCAAGAGGA
EST: CGGACCACGACTCCGACGACTCCGCGGAGCTCATCTCCCACAGACAGCAG CAAAATTATAGTATATTGAGTGAAGTTGATATACAGCGGCGCCAAGAGGAT
genomic: CGGACCACGACTCCGACGACTCCGCGGAGCTCATCTCCCACAGACAGCAGgtgatctccg ... tgtgccacagCAAAATTATAGTATATTGAGTGAAGTTGATATACAGCGGCGCCAAGAGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGCCGGTCTCGCCGCCAGCGACGACGGAGACGCCGACTACGACTTTGCGGACCACGACTCCGACGACTCCGCGGAGCTCATCTCCCACAGACAGCAGgtgatctccggctcccggccgtgggtggtgcgtggcgtgtgtgagagtggatctgcttctgtacggtgaatgcggaaatggaggattgtgaatctaggcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA