1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AACGCCGGCGTCCCCACCTGTCAAGCGGCGGCGCAAGGACATCGCTGGACAGGCCGCTGCTATGCCGAAGAGAGGCAACACCTCGAGTCTACTGGACAAGgtaatctatcttacccggatgaccggattggagggagtgttcagtggtgcagtaggtggcttgagttgcaaactatatcgaatccctcgactgcttattg...
species | Zea mays |
transcript | GRMZM5G876003_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGCCGCTGCTATGCCGAAGAGAGGCAACACCTCGAGTCTACTGGACAAG ATGCGTGCAAGGTTATCTGGTGGCCATTTTAGAATGTTAAACGAGAAGCTAEST: gi|37423471|gb|CF649463.1|CF649463
genomic: AGGCCGCTGCTATGCCGAAGAGAGGCAACACCTCGAGTCTACTGGACAAGgtaatctatc ... gacatcttagATGCGTGCAAGGTTATCTGGTGGCCATTTTAGAATGTTAAACGAGAAGCTA
EST: AGGCCGCTGCTATGCCGAAGAGAGGCAACACCTCGAGTCTACTGGACAAG ATGCGTGCAAGGTTATCTGGTGGCCATTTTAGAATGTTAAACGAGAAGCTAEST: gi|76917955|gb|DV167089.1|DV167089
genomic: AGGCCGCTGCTATGCCGAAGAGAGGCAACACCTCGAGTCTACTGGACAAGgtaatctatc ... gacatcttagATGCGTGCAAGGTTATCTGGTGGCCATTTTAGAATGTTAAACGAGAAGCTA
EST: AGGCCGCTGCTATGCCGAAGAGAGGCACCACCTCGAGTCTACTGCACAAG ATGCGTGCAAGGTTACCTGGTGGCCCATTTTAAGAATGTTAAEST: gi|76919742|gb|DV167846.1|DV167846
genomic: AGGCCGCTGCTATGCCGAAGAGAGGCAACACCTCGAGTCTACTGGACAAGgtaatctatc ... gacatcttagATGCGTGCAAGGTTATCTGGTGGCC-ATTTTA-GAATGTTAA
EST: AGGCCGCTGCTATGCCGAAGAGAGGCAACACCTCGAGTCTACTGGACAAG ATGCGTGCAAGGTTATCTGGTGGCCATTTTAGAATGTTAAACGAGAAGCTA
genomic: AGGCCGCTGCTATGCCGAAGAGAGGCAACACCTCGAGTCTACTGGACAAGgtaatctatc ... gacatcttagATGCGTGCAAGGTTATCTGGTGGCCATTTTAGAATGTTAAACGAGAAGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACGCCGGCGTCCCCACCTGTCAAGCGGCGGCGCAAGGACATCGCTGGACAGGCCGCTGCTATGCCGAAGAGAGGCAACACCTCGAGTCTACTGGACAAGgtaatctatcttacccggatgaccggattggagggagtgttcagtggtgcagtaggtggcttgagttgcaaactatatcgaatccctcgactgcttattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atccctcg