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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGTCGCCCCCCTCCTCCGCCACTTCCTCCACAGCCACCCGGATCATTGGGCACGCCCGATACGGCCACGACAGCCCCGTCGGCCTCGTGCACCTCAAGgtcaggcccgcttcgtccccccgccagcactccccacccctactgtaatgcttccctggatgatctctattctctaattaattacttctatctctgcccc...

Basic information

species Zea mays
transcript GRMZM5G875564_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211178686|gb|FL100545.1|FL100545
EST:     ACGGCCACGACAGCCCCGTCGGCCTCGTGCACCTCAAG                         ATCTCCTCGTTCCGTGAAAGCAAGTCAGATGACAGGCGGTTCTACCTAATT
genomic: ACGGCCACGACAGCCCCGTCGGCCTCGTGCACCTCAAGgtcaggcccg ... atatctccagATCTCCTCGTTCCGTGAAAGCAAGTCAGATGACAGGCGGTTCTACCTAATT
EST: gi|211178687|gb|FL100546.1|FL100546
EST:     ACGGCCACGACAGCCCCGTCGGCCTCGTGCACCTCAAG                         ATCTCCTCGTTCCGTGAAAGCAAGTCAGATGACAGGCGGTTCTACCTAATT
genomic: ACGGCCACGACAGCCCCGTCGGCCTCGTGCACCTCAAGgtcaggcccg ... atatctccagATCTCCTCGTTCCGTGAAAGCAAGTCAGATGACAGGCGGTTCTACCTAATT
EST: gi|211178684|gb|FL100543.1|FL100543
EST:     ACGGCCACGACAGCCCCGTCGGCCTCGTGCACCTCAAG                         ATCTCCTCGTTCCGTGAAAGCAAGTCAGATGACAGGCGGTTCTACCTAATT
genomic: ACGGCCACGACAGCCCCGTCGGCCTCGTGCACCTCAAGgtcaggcccg ... atatctccagATCTCCTCGTTCCGTGAAAGCAAGTCAGATGACAGGCGGTTCTACCTAATT
EST: gi|211178685|gb|FL100544.1|FL100544
EST:     ACGGCCACGACAGCCCCGTCGGCCTCGTGCACCTCAAG                         ATCTCCTCGTTCCGTGAAAGCAAGTCAGATGACAGGCGGTTCTACCTAATT
genomic: ACGGCCACGACAGCCCCGTCGGCCTCGTGCACCTCAAGgtcaggcccg ... atatctccagATCTCCTCGTTCCGTGAAAGCAAGTCAGATGACAGGCGGTTCTACCTAATT