Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGATCATCGTCGGCCGACCTTCGCCGCCGCCTTATCGTCCCCAGCTCCACCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagacgctttcctttatatttgacacatcgttctctctctcttcaagaatcgaacctgatgcttgtatatatgcag

Basic information

species Zea mays
transcript GRMZM5G873519_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78076172|gb|DV504606.1|DV504606
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211339837|gb|FL096300.1|FL096300
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211347030|gb|FL096344.1|FL096344
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211337445|gb|FL096291.1|FL096291
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|74234749|gb|DT642663.1|DT642663
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211337441|gb|FL096287.1|FL096287
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211349427|gb|FL096354.1|FL096354
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211344632|gb|FL096334.1|FL096334
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|148933875|gb|EC877845.2|EC877845
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211344631|gb|FL096333.1|FL096333
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211354248|gb|FL096387.1|FL096387
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTTCACAGGAGTGCTGCCCGCC                         ATTAATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGGATTCTGCTCGCCAT
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTA-TCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCAT
EST: gi|211349438|gb|FL096365.1|FL096365
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211339846|gb|FL096309.1|FL096309
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|149099738|gb|EE185791.2|EE185791
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211339842|gb|FL096305.1|FL096305
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211337449|gb|FL096295.1|FL096295
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211344634|gb|FL096336.1|FL096336
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211347029|gb|FL096343.1|FL096343
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211344628|gb|FL096330.1|FL096330
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211347032|gb|FL096346.1|FL096346
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211342239|gb|FL096323.1|FL096323
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211354249|gb|FL096388.1|FL096388
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211342236|gb|FL096320.1|FL096320
EST:     CGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTNGCCCGCC                         ATTATCGGGGGTGGCGCATCCTGCTCGTGTCGCTTGGGGCATTC
genomic: CGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCT-GCCCGCCgtgagaagac ... atatatgcagATTATCGGGG-TGGCGCATC-TGCTCGTGTCGCT-GGG-CATTC
EST: gi|211337442|gb|FL096288.1|FL096288
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211347037|gb|FL096351.1|FL096351
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCT
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCT
EST: gi|211349433|gb|FL096360.1|FL096360
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211349437|gb|FL096364.1|FL096364
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211349435|gb|FL096362.1|FL096362
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211457241|gb|FL096396.1|FL096396
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211344626|gb|FL096328.1|FL096328
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211349432|gb|FL096359.1|FL096359
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211339841|gb|FL096304.1|FL096304
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211344630|gb|FL096332.1|FL096332
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211351839|gb|FL096371.1|FL096371
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211347036|gb|FL096350.1|FL096350
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211296010|gb|FL014406.1|FL014406
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTAATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCAT
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTA-TCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCAT
EST: gi|76285948|gb|DV025516.1|DV025516
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211342229|gb|FL096313.1|FL096313
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211354251|gb|FL096390.1|FL096390
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGGCTCGTGTC
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTG-CTCGTGTC
EST: gi|211339835|gb|FL096298.1|FL096298
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211351838|gb|FL096370.1|FL096370
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211351847|gb|FL096379.1|FL096379
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211342234|gb|FL096318.1|FL096318
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211351841|gb|FL096373.1|FL096373
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211354250|gb|FL096389.1|FL096389
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211349436|gb|FL096363.1|FL096363
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211349440|gb|FL096367.1|FL096367
EST:     CGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCCGC-                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCAT
genomic: CGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCC-GCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCAT
EST: gi|211347034|gb|FL096348.1|FL096348
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211342240|gb|FL096324.1|FL096324
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211354254|gb|FL096393.1|FL096393
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCCTGTCGCCTGGGCAT-CTGCTCGCCCA
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGC-TGGGCATTCTGCTCGCC-A
EST: gi|211347039|gb|FL096353.1|FL096353
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCAAG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211354252|gb|FL096391.1|FL096391
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211342233|gb|FL096317.1|FL096317
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211342237|gb|FL096321.1|FL096321
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|74241098|gb|DT649012.1|DT649012
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211344636|gb|FL096338.1|FL096338
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211339847|gb|FL096310.1|FL096310
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211351845|gb|FL096377.1|FL096377
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211354255|gb|FL096394.1|FL096394
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|148974371|gb|EE025146.2|EE025146
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211337451|gb|FL096297.1|FL096297
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211161559|gb|FL410914.1|FL410914
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTC
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTC
EST: gi|211347026|gb|FL096340.1|FL096340
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211351848|gb|FL096380.1|FL096380
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211344635|gb|FL096337.1|FL096337
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTTCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211339836|gb|FL096299.1|FL096299
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211349439|gb|FL096366.1|FL096366
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCACCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211339844|gb|FL096307.1|FL096307
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211351840|gb|FL096372.1|FL096372
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211351849|gb|FL096381.1|FL096381
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211344627|gb|FL096329.1|FL096329
EST:     GCTGGGCAC-GGACACGCCGCCAGTGCTTCAAGCAG-AGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGC
genomic: GCTGG-CACCGGACACGCCGCCAGTGCTTCCA-CAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGC
EST: gi|211457243|gb|FL096398.1|FL096398
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211351844|gb|FL096376.1|FL096376
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|91875592|gb|EB405549.1|EB405549
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
EST: gi|211349428|gb|FL096355.1|FL096355
EST:     CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCC                         ATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG
genomic: CCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagac ... atatatgcagATTATCGGGGTGGCGCATCTGCTCGTGTCGCTGGGCATTCTGCTCGCCATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACGATCATCGTCGGCCGACCTTCGCCGCCGCCTTATCGTCCCCAGCTCCACCGCTGGCACCGGACACGCCGCCAGTGCTTCCACAGGAGTGCTGCCCGCCgtgagaagacgctttcctttatatttgacacatcgttctctctctcttcaagaatcgaacctgatgcttgtatatatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC