Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTCCGTTCAGATCCGGCTACTGGCGTCCCTCCTCCGCCATCTTCCCTACCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttgaggtttcgggttattttcgtgcgttttcttttctagaaacccgagtttctaattgctcagcccgaaatttgggtgaacccgaacgcgcag

Basic information

species Zea mays
transcript GRMZM5G872417_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60352709|gb|DN219682.1|DN219682
EST:     GTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: GTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211475597|gb|FL117476.1|FL117476
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|60346643|gb|DN213616.1|DN213616
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|60338206|gb|DN205179.1|DN205179
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211067480|gb|FL117500.1|FL117500
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|32908532|gb|CF013345.1|CF013345
EST:     CCCCCGGCGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211064740|gb|FL117481.1|FL117481
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211064748|gb|FL117489.1|FL117489
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211064737|gb|FL117478.1|FL117478
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211067485|gb|FL117505.1|FL117505
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|26456923|gb|CA828506.1|CA828506
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|60348947|gb|DN215920.1|DN215920
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211064736|gb|FL117477.1|FL117477
EST:     CCCCCGACGTGGCGACNAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211064744|gb|FL117485.1|FL117485
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211475594|gb|FL117473.1|FL117473
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211070213|gb|FL117508.1|FL117508
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTRAGCTGTTCCAACATTSCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211064741|gb|FL117482.1|FL117482
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211064742|gb|FL117483.1|FL117483
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAKAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211067474|gb|FL117494.1|FL117494
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211064747|gb|FL117488.1|FL117488
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211064749|gb|FL117490.1|FL117490
EST:     CCCCCGACGTGGCGACGAGCTGTGAG-CGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|20811135|gb|BQ295613.1|BQ295613
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211067486|gb|FL117506.1|FL117506
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211067475|gb|FL117495.1|FL117495
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211067476|gb|FL117496.1|FL117496
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211064743|gb|FL117484.1|FL117484
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211064746|gb|FL117487.1|FL117487
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211067478|gb|FL117498.1|FL117498
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211067477|gb|FL117497.1|FL117497
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|31557971|gb|CD527183.1|CD527183
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211064739|gb|FL117480.1|FL117480
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|5343084|gb|AI795494.1|AI795494
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211067484|gb|FL117504.1|FL117504
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|23199819|gb|BU582384.1|BU582384
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211067479|gb|FL117499.1|FL117499
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|60338953|gb|DN205926.1|DN205926
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211064738|gb|FL117479.1|FL117479
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211064745|gb|FL117486.1|FL117486
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211067472|gb|FL117492.1|FL117492
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCYAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|45567457|gb|CK985581.1|CK985581
EST:     CCTCCGACGAGGCGACGAGCTGTGAACCGTGAGCTGTTCCAGCATTCAGG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211067473|gb|FL117493.1|FL117493
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211070212|gb|FL117507.1|FL117507
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211067481|gb|FL117501.1|FL117501
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAG
EST: gi|60358027|gb|DN225000.1|DN225000
EST:     ACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: ACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211064750|gb|FL117491.1|FL117491
EST:     CCCCCGACGTGGCGACGAGCTGTGAGMCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTG
EST: gi|211475593|gb|FL117472.1|FL117472
EST:     CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTG                         TCCTAGTTCAAGCTGAAACGGAGAACATAAAAGAGGAGAGGCTAGGGTTTT
genomic: CCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAA-GGAGAACATAAAAGAGGAGAGGCTAGGGTTTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 399

TTCTCCGTTCAGATCCGGCTACTGGCGTCCCTCCTCCGCCATCTTCCCTACCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTGGCGTCCGAGACCAAACCAAGCTCTCTCCGGCGACGGTGAGGGCTCGATA


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 99

TTCTCCGTTCAGATCCGGCTACTGGCGTCCCTCCTCCGCCATCTTCCCTACCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTGGCGTCCGAGACCAAACCAAGCTCTCTCCGGCGACGGTGAGGGCTCGATA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 99

TTCTCCGTTCAGATCCGGCTACTGGCGTCCCTCCTCCGCCATCTTCCCTACCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTGGCGTCCGAGACCAAACCAAGCTCTCTCCGGCGACGGTGAGGGCTCGATA


Block sizes: 47 (upstream exon), 46 (downstream exon)
Score: 136

TTCTCCGTTCAGATCCGGCTACTGGCGTCCCTCCTCCGCCATCTTCCCTACCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttg ... gaacgcgcagTCCTAGTTCAAGCTGAAAGGAGAACATAAAAGAGGAGAGGCTAGGGTTTTGGCGTCCGAGACCAAACCAAGCTCTCTCCGGCGACGGTGAGGGCTCGATA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCTCCGTTCAGATCCGGCTACTGGCGTCCCTCCTCCGCCATCTTCCCTACCCCCGACGTGGCGACGAGCTGTGAGCCGTGAGCTGTTCCAACATTCCTGgtataccttgaggtttcgggttattttcgtgcgttttcttttctagaaacccgagtttctaattgctcagcccgaaatttgggtgaacccgaacgcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT