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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCACCGCGGCGGCGGTTGCAGCGATGGGGTCCATGACGATCGGTGCCAAGTACAAGACCACGATCAAGGACCCCGGCACCCCGGGCATCCTCCGCATGgtgcgtgccaccctccccttctctctcactccctgcggctctctctcccttcaccttcctcccgacgagtgcgcacggtccgctaacaagctccgggctg...

Basic information

species Zea mays
transcript GRMZM5G870572_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G870572_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os08g25060.1 (Oryza sativa), 5'ss of exon 1
AGCCACCGCGGCGGCGGTTGCAGCGATGGGGTCCATGACGATCGGTGCCAAGTACAAGACCACGATCAAGGACCCCGGCACCCCGGGCATCCTCCGCATGgtgcgt-gccaccctccccttctctctcactccctgcggctctctc---tcccttcaccttcctcccgacgagtgcgcacggtccgctaacaagctccgggctg
 |     |||  || ||   | ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| | ||| |||| |||||||||||| || | || |||  | |  ||| ||||||    ||||| |   |  | || |||  |||||  |   | ||   |||| | |   || |   | |   
CGTGGAGGCGTGGGGGGCGACGGCGATGGGGTCCATGACGATCGGCGCCAAGTACAAGACCACGCTCAAGGACCCCGGCACCACCGGCGTCCTGCGCATGgtgcgtcgcgatcccccctctgttcctccctccctctctctctcccgcatagcgtcgcctctctccctccagctccgattggtcgggtt-taacccttgcg---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211184536|gb|FL153191.1|FL153191
EST:     AGTACAAGACCACGATCAAGGACCCCGGCACCCCGGGCATCCTCCGCATG                         AACGGTGATAGGTTCACCTTCACCCCTAATGATCCACGATCGGCAATGAAG
genomic: AGTACAAGACCACGATCAAGGACCCCGGCACCCCGGGCATCCTCCGCATGgtgcgtgcca ... ctaattacagAACGGTGATAGGTTCACCTTCACCCCTAATGATCCACGATCGGCAATGAAG
EST: gi|211184539|gb|FL153194.1|FL153194
EST:     AGTACAAGACCACGATCAAGGACCCCGGCACCCCGGGCATCCTCCGCATG                         AACGGTGATAGGTTCACCTTCACCCCTAATGATCCACGATCGGCAATGAAG
genomic: AGTACAAGACCACGATCAAGGACCCCGGCACCCCGGGCATCCTCCGCATGgtgcgtgcca ... ctaattacagAACGGTGATAGGTTCACCTTCACCCCTAATGATCCACGATCGGCAATGAAG
EST: gi|211184530|gb|FL153185.1|FL153185
EST:     AGTACAAGACCACGATCAAGGACCCCGGCACCCCGGGCATCCTCCGCATG                         AACGGTGATAGGTTCACCTTCACCCCTAATGATCCACGATCGGCAATGAAG
genomic: AGTACAAGACCACGATCAAGGACCCCGGCACCCCGGGCATCCTCCGCATGgtgcgtgcca ... ctaattacagAACGGTGATAGGTTCACCTTCACCCCTAATGATCCACGATCGGCAATGAAG
EST: gi|148959670|gb|EC905590.2|EC905590
EST:     AGTACAAGACCACGATCAAGGACCCCGGCACCCCGGGCATCCTCCGCATG                         AACGGTGATAGGTTCACCTTCACCCCTAATGATCCACGATCGGCAATGAAG
genomic: AGTACAAGACCACGATCAAGGACCCCGGCACCCCGGGCATCCTCCGCATGgtgcgtgcca ... ctaattacagAACGGTGATAGGTTCACCTTCACCCCTAATGATCCACGATCGGCAATGAAG
EST: gi|211184534|gb|FL153189.1|FL153189
EST:     AGTACAAGACCACGATCAAGGACCCCGGCACCCCGGGCATCCTCCGCATG                         AACGGTGATAGGTTCACCTTCACCCCTAATGATCCACGATCGGCAATGAAG
genomic: AGTACAAGACCACGATCAAGGACCCCGGCACCCCGGGCATCCTCCGCATGgtgcgtgcca ... ctaattacagAACGGTGATAGGTTCACCTTCACCCCTAATGATCCACGATCGGCAATGAAG
EST: gi|211184537|gb|FL153192.1|FL153192
EST:     AGTACAAGACCACGATCNAGGACCCCGGCACCCCGGGCATCCTCCGCATG                         AACGGTGATAGGTTCACCTTCACCCC-AATGATCCACGATCGGCAATGAAG
genomic: AGTACAAGACCACGATCAAGGACCCCGGCACCCCGGGCATCCTCCGCATGgtgcgtgcca ... ctaattacagAACGGTGATAGGTTCACCTTCACCCCTAATGATCCACGATCGGCAATGAAG
EST: gi|211184535|gb|FL153190.1|FL153190
EST:     AGTACAAGACCACGATCAAGGACCCCGGCACCCCGGGCATCCTCCGCATG                         AACGGTGATAGGTTCACCTTCACCCCTAATGATCCACGATCGGCAATGAAG
genomic: AGTACAAGACCACGATCAAGGACCCCGGCACCCCGGGCATCCTCCGCATGgtgcgtgcca ... ctaattacagAACGGTGATAGGTTCACCTTCACCCCTAATGATCCACGATCGGCAATGAAG
EST: gi|211184538|gb|FL153193.1|FL153193
EST:     AGTACAAGACCACGATCAAGGACCCCGGCACCCCGGGCATCCTCCGCATG                         AACGGTGATAGGTTCACCTTCACCCCTAATGATCCACGATCGGCAATGAAG
genomic: AGTACAAGACCACGATCAAGGACCCCGGCACCCCGGGCATCCTCCGCATGgtgcgtgcca ... ctaattacagAACGGTGATAGGTTCACCTTCACCCCTAATGATCCACGATCGGCAATGAAG
EST: gi|89756532|gb|DY686536.1|DY686536
EST:     AGTACAAGACCACGATCAAGGACCCCGGCACCCCGGGCATCCTCCGCATG                         AACGGTGATAGGTTCACCTTCACCCCTAATGATCCACGATCGGCAATGAAG
genomic: AGTACAAGACCACGATCAAGGACCCCGGCACCCCGGGCATCCTCCGCATGgtgcgtgcca ... ctaattacagAACGGTGATAGGTTCACCTTCACCCCTAATGATCCACGATCGGCAATGAAG
EST: gi|211184531|gb|FL153186.1|FL153186
EST:     AGTACAAGACCACGATCAAGGACCCCGGCACCCCGGGCATCCTCCGCATG                         AACGGTGATAGGTTCACCTTCACCCCTAATGATCCACGATCGGCAATGAAG
genomic: AGTACAAGACCACGATCAAGGACCCCGGCACCCCGGGCATCCTCCGCATGgtgcgtgcca ... ctaattacagAACGGTGATAGGTTCACCTTCACCCCTAATGATCCACGATCGGCAATGAAG
EST: gi|211184529|gb|FL153184.1|FL153184
EST:     AGTACAAGACCACGATCAAGGACCCCGGCACCCCGGGCATCCTCCGCATG                         AACGGTGATAGGTTCACCTTCACCCCTAATGATCCACGATCGGCAATGAAG
genomic: AGTACAAGACCACGATCAAGGACCCCGGCACCCCGGGCATCCTCCGCATGgtgcgtgcca ... ctaattacagAACGGTGATAGGTTCACCTTCACCCCTAATGATCCACGATCGGCAATGAAG