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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGGGAGAGTCTCCTCCTCCTCCCCGACCGGAGCGCCGGTGCCATGGAAGGGGGCGGCGAGCACCACCACCCGCTTAGCGTATTCCTCCGGGACGCGAGgtgagcccgcccatccatgaccacggggcatctgctggtcttcatcgccaccccagcaaaactaagggttcaaatttaaatagcccttatattttcccttcttcccgtctccag

Basic information

species Zea mays
transcript GRMZM5G870170_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G870170_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os10g13940.1 (Oryza sativa), 5'ss of exon 1
AGCGGGAGAGTCTCCTCCTCCTCC-CCGACCGGAGCGCCGGTGCCATGGAAGGGGGCGGCGAGCACCACCACCCGCTTAGCGTATTCCTCCGGGACGCGAGgtgagcccgcccatccatgaccacggggcatctgctggtcttcatcgccaccccagcaaaactaagggttcaaatttaaatagcccttatattttcccttcttcccgtctccag
 ||      | |  |  ||||||| |||||     |      | |   |     |||  |   |||||||||||||||||||| |||||||||||||| ||||  |    || |  |||     |||   |||   |  | | | |  ||| |     |   || ||  || |  ||      |  | | |                        
-GCCTCCTCGACCGCAGCTCCTCCGCCGACGCCGCCATGAACGACGCCGTGCCCGGCCACCGCCACCACCACCCGCTTAGCGTCTTCCTCCGGGACGCCAGgtt-gttaaccgagtcat-----cggtctatcgatttttttccctttccatctatttatctctgagtttttattttcttgggggtcctgttgcag-------------------