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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAAGCTGCAGATCCGCGTCGACGAGAACTCCGGCAAGATCGTCGACGCCTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcctcagccctagcaccacgtctggagttcctctcgcctcctcctaggtggttcgggtgtagcgtatagtgtagtctcagtcctccttttttc...

Basic information

species Zea mays
transcript GRMZM5G868273_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G868273_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g47340.1 (Oryza sativa), 5'ss of exon 1
ATGAAGCTGCAGATCCGCGTCGACGAGAACTCCGGCAAGATCGTCGACGCCTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcctcagccctagcac-cacgtctggagttcctctcgcctcctcctaggtggttcgggtgtagcgtatagtgtagtctcagtcctccttttttc
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| |||||||| |||||||||||||| ||  | ||| |  |  | | |      | || | | ||| | | | | || |  || | |||  |    | | ||||  ||     ||| |  
ATGAAGCTGCAGATCCGCGTCGACGAGAGCTCCGGCAAGATCGTCGACGCATGCTTCAAGACCTTTGGGTGCGGATCCGCCATCGCGTCCTCCTCCGTCGgtgagccccccaaccccaactattcccctacctgttcccccccaccttcccttggatgatatggtt-taggcttcgttttcgtcttcgtgaggttttctgt

upper sequence: GRMZM5G868273_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ10697 (Selaginella moellendorffii), 5'ss of exon 1
---ATGAAGCTGCAGATCCGCGTCGACGAGAACTCCGGCAAGATCGTCGACGCCTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcctcagccctagcaccacgtctggagttcctctcgcctcctcctaggtggttcgggt-gtagcgtatagtgtagtctcagtcctccttttttc
   |||||||| || |||||||||| |||  ||   ||||||||||||||  | ||||||||||| |||||||||||||| || || || || || ||||| ||| ||           || | |   | |||   |  ||||||  |||   || | | | | |  | ||||                               
GTGATGAAGCTCCAAATCCGCGTCGGCGACGAC---GGCAAGATCGTCGATTCGTGCTTCAAGACGTTTGGCTGCGGCTCGGCTATCGCATCGTCTTCCGTGGgtaagagattct--ttcttggaattcctcttttggccctctcatctcgcactggctcgctggatttgtag-------------------------------

upper sequence: GRMZM5G868273_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ35746 (Selaginella moellendorffii), 5'ss of exon 1
---ATGAAGCTGCAGATCCGCGTCGACGAGAACTCCGGCAAGATCGTCGACGCCTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcctcagccctagcaccacgtctggagttcctctcgcctcctcctaggtggttcgggt-gtagcgtatagtgtagtctcagtcctccttttttc
   |||||||| || |||||||||| |||  ||   ||||||||||||||  | ||||||||||| |||||||||||||| ||||| || || || ||||| ||| ||     ||   | | | |  || |||      ||||||  |||   || | | | | |  | ||||                               
GTGATGAAGCTCCAAATCCGCGTCGGCGACGAC---GGCAAGATCGTCGATTCGTGCTTCAAGACGTTTGGCTGCGGCTCGGCCATCGCATCGTCTTCCGTGGgtaagagat-tctttcttggaattac-tcttttcgccctctcatctcgcactggctcgctggatttgtag-------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18180166|gb|BM381376.1|BM381376
EST:     TGCTTNCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: TGCTT-CAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|149014007|gb|EE043523.2|EE043523
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|60358552|gb|DN225525.1|DN225525
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|78125336|gb|DV543720.1|DV543720
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|4298770|gb|AI438809.1|AI438809
EST:     CTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|116818985|gb|EC862064.1|EC862064
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|15053963|gb|BI359508.1|BI359508
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|4314763|gb|AI444769.2|AI444769
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|149047150|gb|EE048156.2|EE048156
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|22473092|gb|BU037572.1|BU037572
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|149016048|gb|EE045556.2|EE045556
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|149103445|gb|EE288838.2|EE288838
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|13149884|gb|BG320206.1|BG320206
EST:     CTGCTTCAAGACTTTTGGCTGC-GCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|22935992|gb|BU572267.1|BU572267
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|76925043|gb|DV170266.1|DV170266
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|21809552|gb|BQ667870.1|BQ667870
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|50324457|gb|CO519583.1|CO519583
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|12967979|gb|BG264926.1|BG264926
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|31910891|gb|CD651650.1|CD651650
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|29946153|gb|CB816006.1|CB816006
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|211391591|gb|FL229497.1|FL229497
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGT
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGT
EST: gi|211383685|gb|FL229456.1|FL229456
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAAC
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAAC
EST: gi|211388950|gb|FL229480.1|FL229480
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|211388957|gb|FL229487.1|FL229487
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|148963506|gb|EE014528.2|EE014528
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|76925045|gb|DV170267.1|DV170267
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|28568991|gb|CB280866.1|CB280866
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|211388955|gb|FL229485.1|FL229485
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|74245508|gb|DT653422.1|DT653422
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|31998181|gb|CD661966.1|CD661966
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|14569348|gb|BI097671.1|BI097671
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|60345144|gb|DN212117.1|DN212117
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|211383684|gb|FL229455.1|FL229455
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|32794322|gb|CD946558.1|CD946558
EST:     CTGCTTCAAGACTTTTGACTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|149047152|gb|EE048157.2|EE048157
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|211386316|gb|FL229465.1|FL229465
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAG
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGG-TGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAG
EST: gi|16377339|gb|BI991875.1|BI991875
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|21828616|gb|BQ703300.1|BQ703300
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|211388952|gb|FL229482.1|FL229482
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|22819534|gb|BU499624.1|BU499624
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|50324456|gb|CO519582.1|CO519582
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|60344151|gb|DN211124.1|DN211124
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|26557245|gb|CA829480.1|CA829480
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|211388945|gb|FL229475.1|FL229475
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|89758516|gb|DY687670.1|DY687670
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|89248929|gb|DY620715.1|DY620715
EST:     TTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|32868752|gb|CF008434.1|CF008434
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|211386319|gb|FL229468.1|FL229468
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGG
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGG
EST: gi|18181049|gb|BM382259.1|BM382259
EST:     CTGCTTCCAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|18179792|gb|BM381002.1|BM381002
EST:     TGCTTNC-AGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: TGCTT-CAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|149016047|gb|EE154219.2|EE154219
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|21809553|gb|BQ667871.1|BQ667871
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|14245417|gb|BG873999.1|BG873999
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|32790878|gb|CD943114.1|CD943114
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|149015633|gb|EE045427.2|EE045427
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|149014008|gb|EE043524.2|EE043524
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|211386325|gb|FL229474.1|FL229474
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|91053204|gb|EB163622.1|EB163622
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|8383121|gb|BE056004.1|BE056004
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|211386323|gb|FL229472.1|FL229472
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|29946155|gb|CB816007.1|CB816007
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|32803104|gb|CD955340.1|CD955340
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|91050087|gb|EB160505.1|EB160505
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|7137963|gb|AW499360.1|AW499360
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
EST: gi|211386320|gb|FL229469.1|FL229469
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTT
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTT
EST: gi|211391593|gb|FL229499.1|FL229499
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAA
EST: gi|21987796|gb|BQ779324.1|BQ779324
EST:     CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCG                         CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA
genomic: CTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 330

ATGAAGCTGCAGATCCGCGTCGACGAGAACTCCGGCAAGATCGTCGACGCCTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 363

ATGAAGCTGCAGATCCGCGTCGACGAGAACTCCGGCAAGATCGTCGACGCCTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 396

ATGAAGCTGCAGATCCGCGTCGACGAGAACTCCGGCAAGATCGTCGACGCCTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 309

ATGAAGCTGCAGATCCGCGTCGACGAGAACTCCGGCAAGATCGTCGACGCCTGCTTCAAGACTTTTGGCTGCGGCTCCGCCATAGCGTCCTCGTCCGTCGgtgagcctcc ... atccttgcagCTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC