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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATCCCCGCCGCTCTCCGCCACCCGCACCTCCCCGCCGATGGAGGACTTCTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAGgcaaaactttctttctcagagactgttctttccctgttgccacatctattttctggcaccgcaccgtgaaacattttggtgtgttggtcgatccagccgt...

Basic information

species Zea mays
transcript GRMZM5G868168_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50324151|gb|CO519277.1|CO519277
EST:     CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAG                         GATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
genomic: CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAGgcaaaacttt ... gtttaagcagGATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
EST: gi|31350150|gb|CD434507.1|CD434507
EST:     CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAG                         GATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
genomic: CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAGgcaaaacttt ... gtttaagcagGATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
EST: gi|154130463|gb|EC872173.2|EC872173
EST:     CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAG                         GATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
genomic: CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAGgcaaaacttt ... gtttaagcagGATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
EST: gi|148986921|gb|EE030732.2|EE030732
EST:     CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAG                         GATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
genomic: CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAGgcaaaacttt ... gtttaagcagGATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
EST: gi|78103984|gb|DV522402.1|DV522402
EST:     CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAG                         GATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
genomic: CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAGgcaaaacttt ... gtttaagcagGATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
EST: gi|76931706|gb|DV172823.1|DV172823
EST:     CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAG                         GATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
genomic: CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAGgcaaaacttt ... gtttaagcagGATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
EST: gi|149004790|gb|EE039293.2|EE039293
EST:     CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAG                         GATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
genomic: CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAGgcaaaacttt ... gtttaagcagGATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
EST: gi|91048130|gb|EB158548.1|EB158548
EST:     CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAG                         GATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
genomic: CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAGgcaaaacttt ... gtttaagcagGATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
EST: gi|149078033|gb|EE166771.2|EE166771
EST:     CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAG                         GATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
genomic: CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAGgcaaaacttt ... gtttaagcagGATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
EST: gi|78120174|gb|DV538558.1|DV538558
EST:     CTTTTCCACTCGCCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAG                         GATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
genomic: CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAGgcaaaacttt ... gtttaagcagGATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
EST: gi|149080766|gb|EE169831.2|EE169831
EST:     CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAG                         GATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
genomic: CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAGgcaaaacttt ... gtttaagcagGATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
EST: gi|33467141|gb|CF244190.1|CF244190
EST:     CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAG                         GATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
genomic: CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAGgcaaaacttt ... gtttaagcagGATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
EST: gi|211380395|gb|FK976875.1|FK976875
EST:     CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAG                         GATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
genomic: CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAGgcaaaacttt ... gtttaagcagGATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
EST: gi|211380394|gb|FK976874.1|FK976874
EST:     CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAG                         GATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT
genomic: CTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAGgcaaaacttt ... gtttaagcagGATAGGAGACATGACAATGAGAAGGTGTCAGACAGGTCCTGGTCCTGTTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCATCCCCGCCGCTCTCCGCCACCCGCACCTCCCCGCCGATGGAGGACTTCTTTTCCACTCGTCCGGCGACCCAACCGCGCGCTCCTCGCTCTCGTTCAGgcaaaactttctttctcagagactgttctttccctgttgccacatctattttctggcaccgcaccgtgaaacattttggtgtgttggtcgatccagccgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC