1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGGTGGCCGTGAAGGACAGCCCGAGGGACGCGCCGGGTGCACTGATCTGGGGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAATgtgagttcccgctacacaaggggtggtgccgtggtggtgagtggttttggtccggtttcgatctccctaggttttggaggatttgcttggtcagtcagtg...
species | Zea mays |
transcript | GRMZM5G866954_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAAT GGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCACTTTCTATTGTTGTTEST: gi|149096527|gb|EE182274.2|EE182274
genomic: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAATgtgagttccc ... tcttttgcagGGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTT
EST: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAAT ---C---TTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTTEST: gi|148940025|gb|EC884765.2|EC884765
genomic: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAATgtgagttccc ... tcttttgcagGGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTT
EST: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAAT GGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTTEST: gi|76015170|gb|DT942340.1|DT942340
genomic: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAATgtgagttccc ... tcttttgcagGGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTT
EST: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAAT GGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTTEST: gi|149077240|gb|EE165910.2|EE165910
genomic: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAATgtgagttccc ... tcttttgcagGGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTT
EST: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAAT GGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTTEST: gi|38687769|gb|CK144800.1|CK144800
genomic: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAATgtgagttccc ... tcttttgcagGGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTT
EST: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAAT GGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTTEST: gi|91052940|gb|EB163358.1|EB163358
genomic: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAATgtgagttccc ... tcttttgcagGGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTT
EST: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAAT GGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTTEST: gi|148966465|gb|EE017475.2|EE017475
genomic: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAATgtgagttccc ... tcttttgcagGGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTT
EST: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAAT GGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTTEST: gi|149055191|gb|EE156112.2|EE156112
genomic: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAATgtgagttccc ... tcttttgcagGGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTT
EST: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAAT GGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTTEST: gi|148991448|gb|EE032953.2|EE032953
genomic: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAATgtgagttccc ... tcttttgcagGGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTT
EST: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAAT GGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTTEST: gi|148935202|gb|EC879238.2|EC879238
genomic: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAATgtgagttccc ... tcttttgcagGGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTT
EST: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAAT GGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTTEST: gi|148944361|gb|EC889462.2|EC889462
genomic: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAATgtgagttccc ... tcttttgcagGGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTT
EST: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAAT GGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTTEST: gi|148966380|gb|EE017375.2|EE017375
genomic: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAATgtgagttccc ... tcttttgcagGGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTT
EST: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAAT GGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTTEST: gi|76018831|gb|DT946001.1|DT946001
genomic: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAATgtgagttccc ... tcttttgcagGGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTT
EST: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAAT GGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTTEST: gi|71304052|gb|DR788147.1|DR788147
genomic: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAATgtgagttccc ... tcttttgcagGGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTT
EST: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAAT GGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTT
genomic: GGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAATgtgagttccc ... tcttttgcagGGGCAGCTTGTAGTGGCTGTTTCTTTTGCATATGCGCTTTCTATTGTTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTGGCCGTGAAGGACAGCCCGAGGGACGCGCCGGGTGCACTGATCTGGGGGCCGCGTGTCCCCGGTGGTGGGGCGAGGCGGCGCCGGCTTCCAGGAATgtgagttcccgctacacaaggggtggtgccgtggtggtgagtggttttggtccggtttcgatctccctaggttttggaggatttgcttggtcagtcagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG