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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCCCGCGCACACACTGTCTTTCTCTGCCTTTCTTTCCCTAGCGCCGCGCCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtcccttctgctccttctgcgagaattcaaacaccccgaactccccaaatctagtatttgtattcggatctgaccatttttcactgggcccgcccctgattcgcag

Basic information

species Zea mays
transcript GRMZM5G866758_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101395310|gb|EB819585.1|EB819585
EST:     CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|78087735|gb|DV516128.1|DV516128
EST:     CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|148991412|gb|EE032913.2|EE032913
EST:     CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|33771209|gb|CF273388.1|CF273388
EST:     CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|148999650|gb|EE036638.2|EE036638
EST:     CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|149101180|gb|EE187290.2|EE187290
EST:     CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|149017000|gb|EE045657.2|EE045657
EST:     CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|211492112|gb|FL334536.1|FL334536
EST:     CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|211211228|gb|FL354194.1|FL354194
EST:     CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|211145464|gb|FL359543.1|FL359543
EST:     CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|76284260|gb|DV023828.1|DV023828
EST:     CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|32864391|gb|CF004073.1|CF004073
EST:     CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|211372672|gb|FL327042.1|FL327042
EST:     CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|149081077|gb|EE170177.2|EE170177
EST:     CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|148983224|gb|EE029187.2|EE029187
EST:     CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|148965993|gb|EE016923.2|EE016923
EST:     CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|93281705|gb|EB673969.1|EB673969
EST:     CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|149009773|gb|EE041672.2|EE041672
EST:     CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|211107249|gb|FL258173.1|FL258173
EST:     GGCCGCTTCGCCGGCGACAGCATACTCCAG                         -TCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: GGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|76017959|gb|DT945129.1|DT945129
EST:     CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|71327673|gb|DR800451.1|DR800451
EST:     CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|31353258|gb|CD437615.1|CD437615
EST:     CCGGCGACGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|78091716|gb|DV520090.1|DV520090
EST:     GGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: GGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|67042602|gb|CO468857.1|CO468857
EST:     CCGGCGACGCCATTCGATCAGGCCGTTTCGCCCGCAACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|211107248|gb|FL258172.1|FL258172
EST:     GGCCGCTTCGCCGGCGACAGCATACTCCA-                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: GGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|211033052|gb|FL319725.1|FL319725
EST:     CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|211195416|gb|FL326468.1|FL326468
EST:     CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|76921562|gb|DV168618.1|DV168618
EST:     CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
EST: gi|50324587|gb|CO519713.1|CO519713
EST:     CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAG                         GTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC
genomic: CCGGCGCCGCCATTCGATCAGGCCGCTTCGCCGGCGACAGCATATTCCAGgtatgccgtc ... tgattcgcagGTCGGTTGGTTTTGGCACTTCGGACCGGCGGCCATGGCTTCCGACGGCATC