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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGGAGGAGCACGAGGTTTACGGCCAGGAAATCCCGGAGGACGGCGACATGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccactggatccatgtgtctcacgctataccctcgccctagatccttgcgggttgctgacccccttcagttgcgtgcag

Basic information

species Zea mays
transcript GRMZM5G862331_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G862331_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g52140.2 (Oryza sativa), 5'ss of exon 1
CGAGGAGGAGCACGAGGTTTACGGCCAGGAAATCCCGGAGGACGGCGACATGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccactg----gatccatgtgtct-cacgctat-accctcgccctagatcc--ttgcgggttgctgacccccttcagttgcgtgcag
|||||||||||||||||| ||||| || || |||||||||||||| |||||||||||||| ||||| || |||||  ||  |||||| ||||| ||||||||  | | ||      |||||  |  |||     |||| | |||  |||||  ||   | || |  | || ||||| ||  | |   |||||
CGAGGAGGAGCACGAGGTGTACGGGCAAGAGATCCCGGAGGACGGGGACATGGACGGCGCGGACGTCGACATGGCCTCCGGCGGGGACGACGCCGCGAAGgtctccctacctccatgatccgcgcatctatggtctatgaacctaaccctacttcgagtagctgactact-accccatttggcttgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87152025|gb|DY396814.1|DY396814
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211131812|gb|FL249254.1|FL249254
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGCGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|9461255|gb|BE453642.1|BE453642
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCA
EST: gi|211130892|gb|FL249249.1|FL249249
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|211131815|gb|FL249257.1|FL249257
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|161594401|gb|EY963782.1|EY963782
EST:     CGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: CGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
EST: gi|18964307|gb|BM660930.1|BM660930
EST:     TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAG                         CTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA
genomic: TGGACGGCGCTGACGTTGATATGGCTGCCTCCGGGGATGACGCGGCGAAGgtaccaccac ... ttgcgtgcagCTGCAGGAGCTCGACGAGATGAAGCGCAGGCTGAAGGAGATGGAGGAGGAA