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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTCGAGGCATCACCGGCGCCGCAACTTCGTTGAGGAGGAAGCCCGCACCCGCCCCCGATCCGATGGCCAACAGCAACCTCCCGCGGCGGATCATCAAGgtgcgcgcccgatctgttggcccggagcagatctctcgctcgcctccgatccgattcgttgtgccctcgcctgtttcgtctgacctcgttttgcttccctcgtggttgtggatctgtgcag

Basic information

species Zea mays
transcript GRMZM5G862131_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211174025|gb|FL126939.1|FL126939
EST:     CCGCCCCCGATCCGATGGCCAACAGCAACCTCCCGCGGCGGATCATCAAG                         GAGACGCAGCGACTGCTCAGCGAGCCAG
genomic: CCGCCCCCGATCCGATGGCCAACAGCAACCTCCCGCGGCGGATCATCAAGgtgcgcgccc ... atctgtgcagGAGACGCAGCGACTGCTCAGCGAGCCAG
EST: gi|211175698|gb|FL126948.1|FL126948
EST:     CCGGCCCCGATCCGATGGCCAACAGCAACCTCCCGCGGCGTATCATCAAG                         GAGACGCAGCGACTGCTCAGCGAGCCAG
genomic: CCGCCCCCGATCCGATGGCCAACAGCAACCTCCCGCGGCGGATCATCAAGgtgcgcgccc ... atctgtgcagGAGACGCAGCGACTGCTCAGCGAGCCAG
EST: gi|32790202|gb|CD942438.1|CD942438
EST:     GATCCGATGGCCAACAGCAACCTCCCGCGGCGGATCATCAAG                         GAGACTCAGCGGCTGCTCAGCGAGCCAG
genomic: GATCCGATGGCCAACAGCAACCTCCCGCGGCGGATCATCAAGgtgcgcgccc ... atctgtgcagGAGACGCAGCGACTGCTCAGCGAGCCAG
EST: gi|32790472|gb|CD942708.1|CD942708
EST:     GATCCGATGGCCAACAGCAACCTCCCGCGGCGGATCATCAAG                         GAGACTCAGCGGCTGCTCAGCGAGCCAG
genomic: GATCCGATGGCCAACAGCAACCTCCCGCGGCGGATCATCAAGgtgcgcgccc ... atctgtgcagGAGACGCAGCGACTGCTCAGCGAGCCAG
EST: gi|101390924|gb|EB817397.1|EB817397
EST:     CCGCCCCCGATCCGATGGCCAACAGCAACCTCCCGCGGCGGATCATCAAG                         GAGACGCAGCGACTGCTCAGCGAGCCAG
genomic: CCGCCCCCGATCCGATGGCCAACAGCAACCTCCCGCGGCGGATCATCAAGgtgcgcgccc ... atctgtgcagGAGACGCAGCGACTGCTCAGCGAGCCAG
EST: gi|15100538|gb|BI396329.1|BI396329
EST:     CCGGCCCCGATCCGATGGCCAACAGCAACCTCCCGCGGCGGATCATCAAG                         GAGACGCAGCGACTGCTCAGCGAGCCAG
genomic: CCGCCCCCGATCCGATGGCCAACAGCAACCTCCCGCGGCGGATCATCAAGgtgcgcgccc ... atctgtgcagGAGACGCAGCGACTGCTCAGCGAGCCAG
EST: gi|60352429|gb|DN219402.1|DN219402
EST:     CCGCCCCCGATCCGATGGCCAACAGCAACCTCCCGCGGCGGATCATCAAG                         GAGACGCAGCGACTGCTCAGCGAGCCAG
genomic: CCGCCCCCGATCCGATGGCCAACAGCAACCTCCCGCGGCGGATCATCAAGgtgcgcgccc ... atctgtgcagGAGACGCAGCGACTGCTCAGCGAGCCAG