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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACGAATCGCCGACACTCCAACCCGGAAGAGCCAACGAGGTGACTCCGCGCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctcccttccctacatcgctcgcttgctcgtctcccccatcgagatcggtgggatttttgcgtcgttacggtggtttgatgtgaatttttttttttcggttgattttgctgcag

Basic information

species Zea mays
transcript GRMZM5G850355_T05
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15427202|gb|BI543024.1|BI543024
EST:     GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|32934694|gb|CF039506.1|CF039506
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211017640|gb|FL189740.1|FL189740
EST:     GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|22520740|gb|BU079551.1|BU079551
EST:     TGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: TGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|5566889|gb|AI881800.1|AI881800
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|87156656|gb|DY401445.1|DY401445
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|14242859|gb|BG840665.2|BG840665
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211014870|gb|FL189739.1|FL189739
EST:     GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211535545|gb|FL366410.1|FL366410
EST:     GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACCTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|32908069|gb|CF012882.1|CF012882
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|9254141|gb|BE344609.1|BE344609
EST:     GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211408164|gb|FL390201.1|FL390201
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|9461620|gb|BE453822.1|BE453822
EST:     GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211156517|gb|FL164231.1|FL164231
EST:     GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|14204267|gb|BG837944.1|BG837944
EST:     GCCTCGGTAATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|5456374|gb|AI834064.1|AI834064
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|29167732|gb|CB410992.1|CB410992
EST:     CCTCGGTCATGGGTGACAGCCAATACTCCTTCTCGGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: CCCCGGTCATGGGTGACAGCCAATACTCCTTCTC-TCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211017651|gb|FL189751.1|FL189751
EST:     GCCCCGGTCATGGGTGACAGCCAATACTCCTTATCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|8367928|gb|BE050873.1|BE050873
EST:     GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGGGGAGATTGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|12967998|gb|BG264945.1|BG264945
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211158124|gb|FL164253.1|FL164253
EST:     GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211370171|gb|FL333604.1|FL333604
EST:     GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|32912475|gb|CF017287.1|CF017287
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211100498|gb|FL307608.1|FL307608
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|26559204|gb|CA831439.1|CA831439
EST:     AATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: AATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211352174|gb|FL343457.1|FL343457
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|32906923|gb|CF011736.1|CF011736
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACTGTTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... tttgctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC