1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GACACATTACGATCCGAGGCTGGAGGCAATCGGGATCGAGATAAGGCTCCAAAAGGAGAAGCTTGCCTATATACCAAAGTCGGATAAGGCTGCCAAGGAGgtagtttgatctgtgtatactctgctttgctattgtcatgctaggtgacatggaaggaaaatgagtgatcgagtttccatcttgcacttaattagtgggg...
species | Zea mays |
transcript | GRMZM5G849959_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAAAGGAGAAGCTTGCCTATATACCAAAGTCGGATAAGGCTGCCAAGGAG GATATGTCTGAACTATTTAAACCTCTCACTGCTGAGGAGGAAAATGATGTTEST: gi|76289858|gb|DV029426.1|DV029426
genomic: AAAAGGAGAAGCTTGCCTATATACCAAAGTCGGATAAGGCTGCCAAGGAGgtagtttgat ... cccattctagGATATGTCTGAACTATTTAAACCTCTCACTGCTGAGGAGGAAAATGATGTT
EST: AAAAGGAGAAGCTTGCCTATATACCAAAGTCGGATAAGGCTGCCAAGGAG GATATGTCTGAACTATTTAAACCTCTCACTGCTGAGGAGGAAAATGATGTTEST: gi|71325824|gb|DR799594.1|DR799594
genomic: AAAAGGAGAAGCTTGCCTATATACCAAAGTCGGATAAGGCTGCCAAGGAGgtagtttgat ... cccattctagGATATGTCTGAACTATTTAAACCTCTCACTGCTGAGGAGGAAAATGATGTT
EST: AAAAGGAGAAGCTTGCCTATATACCAAAGTCGGATAAGGCTGCCAAGGAG GATATGTCTGAACTATTTAAACCTCTCACTGCTGAGGAGGAAAATGATGTTEST: gi|149109480|gb|EE190222.2|EE190222
genomic: AAAAGGAGAAGCTTGCCTATATACCAAAGTCGGATAAGGCTGCCAAGGAGgtagtttgat ... cccattctagGATATGTCTGAACTATTTAAACCTCTCACTGCTGAGGAGGAAAATGATGTT
EST: AAAAGGAGAAGCTTGCCTATATACCAAAGTCGGATAAAGCTGCCAAGGAG GATATGTCTGAACTATTTAAACCTCTCACTGCTGAEST: gi|76912086|gb|DV164569.1|DV164569
genomic: AAAAGGAGAAGCTTGCCTATATACCAAAGTCGGATAAGGCTGCCAAGGAGgtagtttgat ... cccattctagGATATGTCTGAACTATTTAAACCTCTCACTGCTGA
EST: AAAAGGAGAAGCTTGCCTATATACCAAAGTCGGATAAGGCTGCCAAGGAG GATATGTCTGAACTATTTAAACCTCTCACTGCTGAGGAGGAAAATGATGTT
genomic: AAAAGGAGAAGCTTGCCTATATACCAAAGTCGGATAAGGCTGCCAAGGAGgtagtttgat ... cccattctagGATATGTCTGAACTATTTAAACCTCTCACTGCTGAGGAGGAAAATGATGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACACATTACGATCCGAGGCTGGAGGCAATCGGGATCGAGATAAGGCTCCAAAAGGAGAAGCTTGCCTATATACCAAAGTCGGATAAGGCTGCCAAGGAGgtagtttgatctgtgtatactctgctttgctattgtcatgctaggtgacatggaaggaaaatgagtgatcgagtttccatcttgcacttaattagtgggg
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG