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TCGCTCGGCCCGCTCCCCCTCCGTCGCAACCGGAACATACCAGCACCGGCGCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGCGCGGACGGACGCCAGgttcgctttcctgccaaaacccgcgcctctttccttccgccctcggtttcgatttcgtccgattcgccgtactagataccccacttgtactacaataatg...
species | Zea mays |
transcript | GRMZM5G846339_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGCGCGGACGGACGCCAG GCTTCCTTCCTGTCTGCATAACAAAGCCGCCGCCATTATGATCTCCACATAEST: gi|148945518|gb|EC890763.2|EC890763
genomic: GCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGCGCGGACGGACGCCAGgttcgctttc ... ttttctccagGCTTCCTTCCTGTCTGCATAACAAAGCCGCCGCCATTATGATCTCCACATA
EST: GCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGCGCGGACGGACGCCAG GCTTCCTTCCTGTCTGCATAACAAAGCCGCCGCCATTATGATCTCCACATAEST: gi|149004827|gb|EE039332.2|EE039332
genomic: GCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGCGCGGACGGACGCCAGgttcgctttc ... ttttctccagGCTTCCTTCCTGTCTGCATAACAAAGCCGCCGCCATTATGATCTCCACATA
EST: GCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGCGCGGACGGACGCCAG GCTTCCTTCCTGTCTGCATAACAAAGCCGCCGCCATTATGATCTCCACATAEST: gi|76915578|gb|DV166043.1|DV166043
genomic: GCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGCGCGGACGGACGCCAGgttcgctttc ... ttttctccagGCTTCCTTCCTGTCTGCATAACAAAGCCGCCGCCATTATGATCTCCACATA
EST: GCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGCGCGGACGGACGCCAG GCTTCCTTCCTGTCTGCATAACAAAGCCGCCGCCATTATGATCTCCACATAEST: gi|149112888|gb|EE295684.2|EE295684
genomic: GCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGCGCGGACGGACGCCAGgttcgctttc ... ttttctccagGCTTCCTTCCTGTCTGCATAACAAAGCCGCCGCCATTATGATCTCCACATA
EST: GCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGCGCGGACGGACGCCAG GCTTCCTTCCTGTCTGCATAACAAAGCCGCCGCCATTATGATCTCCACATAEST: gi|211013669|gb|FL365579.1|FL365579
genomic: GCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGCGCGGACGGACGCCAGgttcgctttc ... ttttctccagGCTTCCTTCCTGTCTGCATAACAAAGCCGCCGCCATTATGATCTCCACATA
EST: GCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGS-CGGACG-ACGCCAG GCTTCCTTCCTGTCTGCATAACAAAGCCGCCGCCATTATGATCTCCACATAEST: gi|211367815|gb|FL346930.1|FL346930
genomic: GCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGCGCGGACGGACGCCAGgttcgctttc ... ttttctccagGCTTCCTTCCTGTCTGCATAACAAAGCCGCCGCCATTATGATCTCCACATA
EST: GCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGCGCGGACGGACGCCAG GCTTCCTTCCTGTCTGCATAACAAAGCCGCCGCCATTATGATCTCCACATAEST: gi|211288821|gb|FL321201.1|FL321201
genomic: GCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGCGCGGACGGACGCCAGgttcgctttc ... ttttctccagGCTTCCTTCCTGTCTGCATAACAAAGCCGCCGCCATTATGATCTCCACATA
EST: GCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGCGCGGAYGGACGCCAG GCTTCCTTCSTGTCTGCATAACAAAGCCGCCGCCATTATGATCTCCACATAEST: gi|211535602|gb|FL367699.1|FL367699
genomic: GCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGCGCGGACGGACGCCAGgttcgctttc ... ttttctccagGCTTCCTTCCTGTCTGCATAACAAAGCCGCCGCCATTATGATCTCCACATA
EST: GCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGS-CGGACGGACGCCAG GCTTCCTTCCTGTCTGCATAACAAAGCCGCCGCCATTATGATCTCCACATAEST: gi|149070557|gb|EE158959.2|EE158959
genomic: GCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGCGCGGACGGACGCCAGgttcgctttc ... ttttctccagGCTTCCTTCCTGTCTGCATAACAAAGCCGCCGCCATTATGATCTCCACATA
EST: GCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGCGCGGACGGACGCCAG GCTTCCTTCCTGTCTGCATAACAAAGCCGCCGCCATTATGATCTCCACATAEST: gi|148950258|gb|EC895810.2|EC895810
genomic: GCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGCGCGGACGGACGCCAGgttcgctttc ... ttttctccagGCTTCCTTCCTGTCTGCATAACAAAGCCGCCGCCATTATGATCTCCACATA
EST: GCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGCGCGGACGGACGCCAG GCTTCCTTCCTGTCTGCATAACAAAGCCGCCGCCATTATGATCTCCACATAEST: gi|148965790|gb|EE016673.2|EE016673
genomic: GCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGCGCGGACGGACGCCAGgttcgctttc ... ttttctccagGCTTCCTTCCTGTCTGCATAACAAAGCCGCCGCCATTATGATCTCCACATA
EST: GCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGCGCGGACGGACGCCAG GCTTCCTTCCTGTCTGCATAACAAAGCCGCCGCCATTATGATCTCCACATA
genomic: GCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGCGCGGACGGACGCCAGgttcgctttc ... ttttctccagGCTTCCTTCCTGTCTGCATAACAAAGCCGCCGCCATTATGATCTCCACATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGCTCGGCCCGCTCCCCCTCCGTCGCAACCGGAACATACCAGCACCGGCGCTGCGGTATTATTCAGCTCCGTCCGCCGGCCGGCGCGGACGGACGCCAGgttcgctttcctgccaaaacccgcgcctctttccttccgccctcggtttcgatttcgtccgattcgccgtactagataccccacttgtactacaataatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccgcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgccct