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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGGTGCTCCCCGACGGCGGTGCTGACGACGAGGAGCGCTGGCTCGCCGAGGGCATCGCCGGCGTCCAGCAAAACGCTTTCTACATGCACCGTGCCCTCgtaagccccctgcggaactatacccccacctgcctaccggctaccgctgcttccttcctcggtccgtgttccaatcatgcaatttgggcgcag

Basic information

species Zea mays
transcript GRMZM5G844195_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G844195_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g58700.1 (Oryza sativa), 5'ss of exon 1
ACGGGTGCTCCCCGACGGCGGTGCTGACGACGAGGAGCGCTGGCTCGCCGAGGGCATCGCCGGCGTCCAGCAAAACGCTTTCTACATGCACCGTGCCCTCgtaagccccctgcggaactatacccccacctgcctaccggctaccgctgcttccttcctcggtccgtgttccaatcatgcaatttgggcgcag
  || |||| || || ||||| || |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| |||  ||  |||  || | ||  | | ||   | || ||    |   ||  ||       ||  || |||  |||||| | ||||||
CAGGATGCTGCCGGATGGCGGCGCCGACGACGAGGAGCGGTGGCTCGCCGAGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggccc--gccaaaccctagctccctcggtctgt-gactgcc----ccctctcgcttatcatctgccccgatcg-gcaattcgtgcgcag

upper sequence: GRMZM5G844195_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA14G40270.1 (Glycine max), 5'ss of exon 1
ACGGGTGCTCCCCGACGGCGGTGCTGACGACGAGGAGCGCTGGCTCGCCGAGGGCATCGCCGGCGTCCAGCAAAACGCTTTCTACATGCACCGTGCCCTCgtaagccccctgcggaactatacccccacctgcctaccggctaccgctgcttccttcctcggtccgtgttccaatcatgcaatttgggcgcag
     ||||  |  || | | | | || ||||| |||   |||||||||||||| ||||||||| | ||||| ||||| |||| |||||| || || || |||  | |  | |   ||   | | |  |||  |  |    | |      |||     | | ||  | |  ||                    
----ATGCTAGC--ACAGGGATTC-GAGGACGAAGAGAAATGGCTCGCCGAGGGGATCGCCGGCATTCAGCACAACGCATTCTTCATGCATCGCGCACTGgtattcactattcttcaccgcagcacttcctaac--ctaatttct--caattcacaatttgctctctctcgcag-------------------

upper sequence: GRMZM5G844195_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA17G37870.1 (Glycine max), 5'ss of exon 2
ACGGGTGCTCCCCGACGGCGGTGCTGACGACGAGGAGCGCTGGCTCGCCGAGGGCATCGCCGGCGTCCAGCAAAACGCTTTCTACATGCACCGTGCCCTCgtaagccccctgcggaactatacccccacctgcctaccggctaccgctgcttccttcctcggtccgtgttccaatcatgcaatttgggcgcag
                   ||    || ||||| |||   |||||||||||||| ||||||||| | ||||| ||||| |||| |||||| || || || ||  |  | || |   ||||| | ||    | | | |   |      | ||   ||| |||     | |  |  ||  |||            
-------------------GGATTCGAGGACGAAGAGAAATGGCTCGCCGAGGGGATCGCCGGCATTCAGCACAACGCATTCTTCATGCATCGCGCACTGgttggtactcttc---actattcaccgcagtacttccttaccctaatttctcaattcttcg-cgattctctctctctcgcag-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211321312|gb|FL043261.1|FL043261
EST:     AGGGCATCGCCGGCGTCCAGCAAAACGCTTTCTACATGCACCGTGCCCTC                         GATTCCAACAACCTCAAGGACGCACTCAAGTACTCGGCGCAGATGCTATCA
genomic: AGGGCATCGCCGGCGTCCAGCAAAACGCTTTCTACATGCACCGTGCCCTCgtaagccccc ... ttgggcgcagGATTCCAACAACCTCAAGGACGCACTCAAGTACTCGGCGCAGATGCTATCA
EST: gi|148965445|gb|EE016251.2|EE016251
EST:     AGGGCATCGCCGGCGTCCAGCAAAACGCTTTCTACATGCACCGTGCCCTC                         GATTCCAACAACCTCAAGGACGCACTCAAGTACTCGGCGCAGATGCTATCA
genomic: AGGGCATCGCCGGCGTCCAGCAAAACGCTTTCTACATGCACCGTGCCCTCgtaagccccc ... ttgggcgcagGATTCCAACAACCTCAAGGACGCACTCAAGTACTCGGCGCAGATGCTATCA
EST: gi|22472525|gb|BU037005.1|BU037005
EST:     AGGGCATCGCCGGCGTCCAGCAAAACGCTTTCTACATGCACCGTGCCCTC                         GATTCCAACAACCTCAAGGACGCACTCAAGTACTCGGCGCAGATGCTATCA
genomic: AGGGCATCGCCGGCGTCCAGCAAAACGCTTTCTACATGCACCGTGCCCTCgtaagccccc ... ttgggcgcagGATTCCAACAACCTCAAGGACGCACTCAAGTACTCGGCGCAGATGCTATCA