1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAACGACGCCATGAGCCGCTGCGCCGCCTCCAGCGCCACCACCACCTCCGTCTCCCAGAAGCTCGCGCGCCACCGCGACATCCTCCACGAGTTCACGCAGgtccactcctccgctccgctcctcgcagtctcctttcgttgatccaccggttagtaatcgctccaagcatggaagcag
species | Zea mays |
transcript | GRMZM5G838961_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCTCCCAGAAGCTCGCGCGCCACCGCGACATCCTCCACGAGTTCACGCAG GAGTTCAGGCGGACGAGGGGGAACCTGAGCTCCATGAGGGAGCACGCCGATEST: gi|32823534|gb|CD963256.1|CD963256
genomic: TCTCCCAGAAGCTCGCGCGCCACCGCGACATCCTCCACGAGTTCACGCAGgtccactcct ... atggaagcagGAGTTCAGGCGGACGAGGGGGAACCTGAGCTCCATGAGGGAGCACGCCGAT
EST: TCTCCCAGAAGCTCGCGCGCCACCGCGACATCCTCCACGAGTTCACGCAG GAGTTCAGGCGGACGAGGGGGAACCTGAGCTCCATGAGGGAGCACGCCGATEST: gi|32801025|gb|CD953261.1|CD953261
genomic: TCTCCCAGAAGCTCGCGCGCCACCGCGACATCCTCCACGAGTTCACGCAGgtccactcct ... atggaagcagGAGTTCAGGCGGACGAGGGGGAACCTGAGCTCCATGAGGGAGCACGCCGAT
EST: TCTCCCAGAAGCCCGCGCGCCACCGCGACATCCTCCACGAGTTCACGCAG GAGTTCAGGCGGACGAGGGGGAACCTGAGCTCCATGAGGGAGCACGCCGATEST: gi|32788987|gb|CD941223.1|CD941223
genomic: TCTCCCAGAAGCTCGCGCGCCACCGCGACATCCTCCACGAGTTCACGCAGgtccactcct ... atggaagcagGAGTTCAGGCGGACGAGGGGGAACCTGAGCTCCATGAGGGAGCACGCCGAT
EST: TCTCCCAGAAGCTCGCGCGCCACCGCGACATCCTCCTCGAGTTCACGCAG GAGTTCAGGCGGACGAGGGGGAACCTGAGCTCCATGAGGGAGCACGCCGATEST: gi|32801322|gb|CD953558.1|CD953558
genomic: TCTCCCAGAAGCTCGCGCGCCACCGCGACATCCTCCACGAGTTCACGCAGgtccactcct ... atggaagcagGAGTTCAGGCGGACGAGGGGGAACCTGAGCTCCATGAGGGAGCACGCCGAT
EST: TCTCCCAGAAGCTCGCGCGCCACCGCGACATCCTCCACGAGTTCACGCAG GAGTTCAGGCGGACGAGGGGGAACCTGAGCTCCATGAGGGAGCACGCCGATEST: gi|32823954|gb|CD963676.1|CD963676
genomic: TCTCCCAGAAGCTCGCGCGCCACCGCGACATCCTCCACGAGTTCACGCAGgtccactcct ... atggaagcagGAGTTCAGGCGGACGAGGGGGAACCTGAGCTCCATGAGGGAGCACGCCGAT
EST: TCTCCCAGAAGCTCGCGCGCCACCGCGACATCCTCCACGAGTTCACGCAG GAGTTCAGGCGGACGAGGGGGAACCCTGAGCTCCATGAGGGAGCACGCCGAEST: gi|71758975|gb|DR956912.1|DR956912
genomic: TCTCCCAGAAGCTCGCGCGCCACCGCGACATCCTCCACGAGTTCACGCAGgtccactcct ... atggaagcagGAGTTCAGGCGGACGAGGGGGAACC-TGAGCTCCATGAGGGAGCACGCCGA
EST: TCTCCCAGAAGCTCGCGCGCCACCGCGACATCCTCCACGAGTTCACGCAG GAGTTCAGGCGGACGAGGGGGAACCTGAGCTCCATGAGGGAGCACGCCGATEST: gi|32804431|gb|CD956667.1|CD956667
genomic: TCTCCCAGAAGCTCGCGCGCCACCGCGACATCCTCCACGAGTTCACGCAGgtccactcct ... atggaagcagGAGTTCAGGCGGACGAGGGGGAACCTGAGCTCCATGAGGGAGCACGCCGAT
EST: TCTCCCAGAAGCTCGCGCGCCACCGCGACATCCTCCACGAGTTCACGCAG GAGTTCAGGCGGACGAGGGGGAACCTGAGCTCCATGAGGGAGCACGCCGATEST: gi|76017094|gb|DT944264.1|DT944264
genomic: TCTCCCAGAAGCTCGCGCGCCACCGCGACATCCTCCACGAGTTCACGCAGgtccactcct ... atggaagcagGAGTTCAGGCGGACGAGGGGGAACCTGAGCTCCATGAGGGAGCACGCCGAT
EST: TCTCCCAGAAGCTCGCGCGCCACCGCGACATCCTCCACGAGTTCACGCAG GAGTTCAGGCGGACGAGGGGGAACCTGAGCTCCATGAGGGAGCACGCCGATEST: gi|211238072|gb|FL481633.1|FL481633
genomic: TCTCCCAGAAGCTCGCGCGCCACCGCGACATCCTCCACGAGTTCACGCAGgtccactcct ... atggaagcagGAGTTCAGGCGGACGAGGGGGAACCTGAGCTCCATGAGGGAGCACGCCGAT
EST: TCGCGCGCCACCGCGACATCCTCCACGAGTTCACGCAG GAGTTCAGGCGGACGAGGGGGAACYTGAGCTCCATGAGGGAGCACGCCGATEST: gi|32803397|gb|CD955633.1|CD955633
genomic: TCGCGCGCCACCGCGACATCCTCCACGAGTTCACGCAGgtccactcct ... atggaagcagGAGTTCAGGCGGACGAGGGGGAACCTGAGCTCCATGAGGGAGCACGCCGAT
EST: TCTCCCAGAAGCTCGCGCGCCACCGCGACATCCTCCACGAGTTCACGCAG GAGTTCAGGCGAACGAGGGGGAACCTGAGCTCCATGAGGGAGCACGCCGAT
genomic: TCTCCCAGAAGCTCGCGCGCCACCGCGACATCCTCCACGAGTTCACGCAGgtccactcct ... atggaagcagGAGTTCAGGCGGACGAGGGGGAACCTGAGCTCCATGAGGGAGCACGCCGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACGACGCCATGAGCCGCTGCGCCGCCTCCAGCGCCACCACCACCTCCGTCTCCCAGAAGCTCGCGCGCCACCGCGACATCCTCCACGAGTTCACGCAGgtccactcctccgctccgctcctcgcagtctcctttcgttgatccaccggttagtaatcgctccaagcatggaagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC