1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CGCCTCCGATCCGCTGCTTACTCGCCACCCGGAGATGGCCACCGCCGCCGCCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctccgcgccgtcccctgccgtcattcagttcctcctgcccattcgcgcttggtttcagtggactgggggggtctgaacgtcacatgttctggctttgtttgatggctgcag
species | Zea mays |
transcript | GRMZM5G836910_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCEST: gi|211235881|gb|FL028766.1|FL028766
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCEST: gi|211238121|gb|FL028781.1|FL028781
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: CTTCTCCGTCTCCTCGCCGGCGGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGGEST: gi|16378665|gb|BI992547.1|BI992547
genomic: CTTCTCTGTCTCCTCGCCGGC-GGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC-GG
EST: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCEST: gi|211238133|gb|FL028793.1|FL028793
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCG-STTCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCEST: gi|211240363|gb|FL028799.1|FL028799
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: CTTCTCCGTCTCCTCGCCGGCGGCCTCCG-CGTNCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGSEST: gi|211235883|gb|FL028768.1|FL028768
genomic: CTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGT-CGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCEST: gi|94477439|gb|EB706397.1|EB706397
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCEST: gi|71440750|gb|DR821800.1|DR821800
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCEST: gi|211235892|gb|FL028777.1|FL028777
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCEST: gi|211240361|gb|FL028797.1|FL028797
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCEST: gi|149107658|gb|EE189537.2|EE189537
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCEST: gi|211235886|gb|FL028771.1|FL028771
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCEST: gi|211140315|gb|FL028760.1|FL028760
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGC-C-ATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCEST: gi|149112604|gb|EE191381.2|EE191381
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCEST: gi|211238128|gb|FL028788.1|FL028788
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCEST: gi|78104308|gb|DV522726.1|DV522726
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCEST: gi|211235895|gb|FL028780.1|FL028780
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCEST: gi|76289791|gb|DV029359.1|DV029359
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCEST: gi|211140308|gb|FL028753.1|FL028753
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCEST: gi|148941508|gb|EC886438.2|EC886438
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCEST: gi|211235888|gb|FL028773.1|FL028773
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCEST: gi|211140313|gb|FL028758.1|FL028758
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCEST: gi|211240365|gb|FL028801.1|FL028801
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCEST: gi|211140307|gb|FL028752.1|FL028752
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCEST: gi|78114229|gb|DV532618.1|DV532618
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCEST: gi|211240360|gb|FL028796.1|FL028796
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCEST: gi|211140314|gb|FL028759.1|FL028759
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCEST: gi|211235884|gb|FL028769.1|FL028769
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCEST: gi|149000841|gb|EE038069.2|EE038069
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCEST: gi|211240366|gb|FL028802.1|FL028802
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCEST: gi|211139377|gb|FL028748.1|FL028748
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCEST: gi|211235891|gb|FL028776.1|FL028776
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCEST: gi|211140317|gb|FL028762.1|FL028762
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCEST: gi|71767561|gb|DR965498.1|DR965498
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCEST: gi|211139376|gb|FL028747.1|FL028747
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCEST: gi|211140306|gb|FL028751.1|FL028751
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTT---GGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTC
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCEST: gi|211238122|gb|FL028782.1|FL028782
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGCEST: gi|211238131|gb|FL028791.1|FL028791
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
EST: CCTTCTCCGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAG GTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
genomic: CCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctcc ... atggctgcagGTGTTTGGAGGAGTTAACCAGGCGAGAACTAGAACTGGCTGCCGCGTCGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCTCCGATCCGCTGCTTACTCGCCACCCGGAGATGGCCACCGCCGCCGCCTTCTCTGTCTCCTCGCCGGCGGCCTCCGCCGTCGCCGCGCGATCCAAGgcagagctccgcgccgtcccctgccgtcattcagttcctcctgcccattcgcgcttggtttcagtggactgggggggtctgaacgtcacatgttctggctttgtttgatggctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC