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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCTTAGCTGTTTGGTATGGATCTAAGCTGATAGTCGAGCGAGGTTACAATGGTAGCATGGTCATTTCTGTTATCATGTCTGTCATGATCGGAGTAATgtaagttttctattatcatttaaaattttcttaaatgaacaatgacaataagcgagcaatatatgtttctgtgtggacgagcctcgactctgtcacatga...

Basic information

species Zea mays
transcript GRMZM5G836897_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G836897_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g35030.1 (Oryza sativa), 5'ss of exon 6
ATGGCTTAGCTGTTTGGTATGGATCTAAGCTGATAGTCGAGCGAGGTTACAATGGTAGCATGGTCATTTCTGTTATCATGTCTGTCATGATCGGAGTAATgtaagttt---tctattatcatttaaaatttt---cttaaatgaacaatgacaataagcgagcaatatatg-tttctgtgtggacgagcctcgactctgtcacatga
|||| || || ||||||||||||||||   |||||||||||||||| ||||||||| |||| || |||  |||||| ||| || | |||||| | | ||||||||||      || | |   |||    | |   ||| ||||||  || | || | | |  | | ||||| | | |   || | ||  |  || | ||  |     
ATGGGTTGGCGGTTTGGTATGGATCTAGATTGATAGTCGAGCGAGGCTACAATGGTGGCATTGTTATTAATGTTATAATGGCTATAATGATCAGTGCAATgtaagttcatacttaatcttggttaccgctgtatgcttgaatgaattat-ataacatgtggcccaaatatgatatatacatgaaggattca-gattatggta-----

upper sequence: GRMZM5G836897_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g34970.1 (Oryza sativa), 5'ss of exon 5
ATGGCTTAGCTGTTTGGTATGGATCTAAGCTGATAGTCGAGCGAGGTTACAATGGTAGCATGGTCATTTCTGTTATCATGTCTGTCATGATCGGAGTAATgtaagttttctattatcatttaaaattttcttaaatgaacaatgacaataagcgagcaatatatgtttctgtgtggacgagcctcgactctgtcacatga---------
|||| || || |||||||||||||| || ||||||||| | || || ||||||||| |||| || ||   |||| | |||||||||||||| || | |||||||||||  |||    |||  ||   | ||   ||||| | | |  |||||  |  || |  |||| | |  |  ||  |  | |  |   | |   ||         
ATGGTTTGGCAGTTTGGTATGGATCGAAACTGATAGTCAACCGTGGATACAATGGTGGCATAGTTATAAATGTTCTAATGTCTGTCATGATGGGTGCAATgtaagtttcatat----att--aaccctgctcccatgaatagttaagataag--attaaaacttgttacagaatttacttgt-tagtgtagattatgggaaggtgggta