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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGGTGGGGCAATTCTCTGTGATTCCTCTTTCTCGTCTCTCCGGTGACGGgtgacgggtgacgggcgtggcttttgtggaatctacgattgatggggttacgatttgggggttttccgcgcttaaggcagccggcggggttcgggagctt...

Basic information

species Zea mays
transcript GRMZM5G835213_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G835213_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g40510.1 (Oryza sativa), 5'ss of exon 1
-----------------------------------------------CGCCCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGGTGGGGCAATTCTCTGTGATTCCTCTTTCTCGTCTCTCCGGTGACGGgtgacgggtgacgggcgtggcttttgtggaatctacgattgatggggttacgatttgggggttttccgcgcttaaggcagccggcggggttcgggagctt
                                               ||||||||||||||  ||||||||||||||| ||||||||||| || || |||||||  ||||         |  |||| ||    |  | || | |  ||| | || |       |||| ||||    | | | || | ||  ||||| || ||| |||| |                                     
GCAGCAGCAGGCTGCGGCGGTGGCGGCGGCGGCGCAGCAGCAGCAGGCGCCCTTGTTCCCCCCGCACCACCCGCACCCGGGCCTCCTCGCGGCGCCGCAGgtggcccaatctctctccctctctctctccttccgtttcgatcagcggtcagggtttg-----gtggattttt---actgtgcggtcga--gggtttcgtttttggggat-------------------------------------

upper sequence: GRMZM5G835213_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g40510.2 (Oryza sativa), 5'ss of exon 1
--------------------CGCCCTTGTTCCCCGGGCACCACCCGCACCCCGGCCTCCTCGCCGCACCACAGGTGGGGCAATTCTCTGTGATTCCTCTTTCTCGTCTC-TCCGGTGACGGgtgacgggtgacgggcgtggcttttgtggaatctacgattgatggggttacgatttgggggttttccgcgcttaaggcagccggcggggttcgggagctt
                         ||| ||  |  ||| || | ||| |        |  || ||  |   || |  |||        |||| |  |   | |  ||| | | |   | |  | | |  | |||  | |||    | | |  |  |    |  |   ||         |      |||| |    | |  |                   
ATCGATCGATTGAGTGATTGGTTGATTGATCGACATGCAGCATCAGCAGCGGATGAAGCAGGCGGCGGCGGCGGCGCAGCAGCAGCAGATGATGCAGCAGgcgctgctcatgcagcagcagcaggctg-cggcggtggcggcggcggcgcag-cagcagcaggcgcccttgttccccccgcaccacccgcacccgggcctcc-------------------