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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGCCTTCGTCCTGCACGGCCTCCTCGGTTCCGGCCGCAACTGGCGCTCCTTCTCTCGCGCCCTCGTCTCCGAACTCCGTAACCGCTCCCCTTCAGACGgtattcccaaacccattccctttagcagtgcaataataataaaaaacaccgatttcctcatttttttccgttgttatctagcgcacaaccaccgaatacagtttaatagattgctattgatgaaggacacgaagttgtttacagagctgattgtttggcgttcgtatgtgtactggtgtgcag

Basic information

species Zea mays
transcript GRMZM5G831584_T04
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G831584_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g64262.1 (Oryza sativa), 5'ss of exon 1
ACTGCCTTCGTCCTGCACGGCCTCCTCGGTTCCGGCCGCAACTGGCGCTCCTTCTCTCGCGCCCTCGTCTCCGAACTCCGTAACCGCTCCCCTTCAGACGgtattcccaaacccattccctttagcagt--gcaataataataaaaaacaccgatttcctcatttttttccgttgttatctagcgcacaaccaccgaatacagtttaatagattgctattgatgaaggacacgaagttgtttacagagctgattgtttggcgttcgtatgtgtactggtgtgcag
|| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||| |||||  ||||||||||||| |||||||| ||  ||   |||||   ||  | |  |||||  |    |    || ||||         |||   |||||  ||  || | |  |   |  |     | | |||    |||  ||      |  || |    ||  |  ||                                       
ACCGCCTTCGTCCTCCACGGCCTCCTCGGCTCCGGCCGCAACTGGCGCTCCTTCTCCCGCGCCCTCGCCTCCGAGCTCCGCGACCGCTCCCCTTCCGACGgtatgcctcaa---attcctcgtactatttagcaatgttctcgatgtgcaacgata-----ggatttgatcgttgggatggagggaatcatttc--acctaggctgaattttgtgccgtt--ctgtgatcatgcctctgcctgtag---------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74241544|gb|DT649458.1|DT649458
EST:     CTTCTCTCGCGCCCTCGTCTCCGAACTCCGTAACCGCTCCCCTTCAGACG                         AGTGGAGGATGGTTCTCGTGGACTTGAGGAACCATGGCAGATCGGCTGGGA
genomic: CTTCTCTCGCGCCCTCGTCTCCGAACTCCGTAACCGCTCCCCTTCAGACGgtattcccaa ... tggtgtgcagAGTGGAGGATGGTTCTCGTGGACTTGAGGAACCATGGCAGATCGGCTGGGA