1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CACCCGGGCGCGTGCACGGGAGACGGGAGTATGGACAAGAGCGCGGTGGCGGCATACGACGTCGAGCGGGGCGACTACGAGGAGGAGCACGAACGGAGAGgtgcgtgccctgtcctgcctcctgtcatccccatggttgggctggggagatcctttccagctggatgggatcggtcaagggcctcggcgattaattctcgcggaatcgcgaatttgttgaccccccttctctcggtttcctgttcgttccag
species | Zea mays |
transcript | GRMZM5G830545_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCATACGACGTCGAGCGGGGCGACTACGAGGAGGAGCACGAACGGAGAG GGACGGTATGGACGGCGACGGCGCACATTGTGACGGCGGTGATCGGCTCCGEST: gi|89762390|gb|DY689996.1|DY689996
genomic: GGCATACGACGTCGAGCGGGGCGACTACGAGGAGGAGCACGAACGGAGAGgtgcgtgccc ... ttcgttccagGGACGGTATGGACGGCGACGGCGCACATTGTGACGGCGGTGATCGGCTCCG
EST: GGCATACGACGTCGAGCGGGGCGACTACGAGGAGGAGCACGAACGGAGAG GGACGGTATGGACGGCGACGGCGCACATTGTGACGGCGGTGATCGGCTCCGEST: gi|149007854|gb|EE040283.2|EE040283
genomic: GGCATACGACGTCGAGCGGGGCGACTACGAGGAGGAGCACGAACGGAGAGgtgcgtgccc ... ttcgttccagGGACGGTATGGACGGCGACGGCGCACATTGTGACGGCGGTGATCGGCTCCG
EST: GGCATACGACGTCGAGCGGGGCGACTACGAGGAGGAGCACGAACGGAGAG GGACGGTATGGACGGCGACGGCGCACATTGTGACGGCGGTGATCGGCTCCGEST: gi|148982434|gb|EE028315.2|EE028315
genomic: GGCATACGACGTCGAGCGGGGCGACTACGAGGAGGAGCACGAACGGAGAGgtgcgtgccc ... ttcgttccagGGACGGTATGGACGGCGACGGCGCACATTGTGACGGCGGTGATCGGCTCCG
EST: GGCATACGACGTCGAGCGGGGCGACTACGAGGAGGAGCACGAACGGAGAG GGACGGTATGGACGGCGACGGCGCACATTGTGACGGCGGTGATCGGCTCCGEST: gi|91051425|gb|EB161843.1|EB161843
genomic: GGCATACGACGTCGAGCGGGGCGACTACGAGGAGGAGCACGAACGGAGAGgtgcgtgccc ... ttcgttccagGGACGGTATGGACGGCGACGGCGCACATTGTGACGGCGGTGATCGGCTCCG
EST: GGCATACGACGTCGAGCGGGGCGACTACGAGGAGGAGCACGAACGGAGAG GGACGGTATGGACGGCGACGGCGCACATTGTGACGGCGGTGATCGGCTCCGEST: gi|148970844|gb|EE021618.2|EE021618
genomic: GGCATACGACGTCGAGCGGGGCGACTACGAGGAGGAGCACGAACGGAGAGgtgcgtgccc ... ttcgttccagGGACGGTATGGACGGCGACGGCGCACATTGTGACGGCGGTGATCGGCTCCG
EST: GGCATACGACGTCGAGCGGGGCGACTACGAGGAGGAGCACGAACGGAGAG GGACGGTATGGACGGCGACGGCGCACATTGTGACGGCGGTGATCGGCTCCGEST: gi|149078952|gb|EE167792.2|EE167792
genomic: GGCATACGACGTCGAGCGGGGCGACTACGAGGAGGAGCACGAACGGAGAGgtgcgtgccc ... ttcgttccagGGACGGTATGGACGGCGACGGCGCACATTGTGACGGCGGTGATCGGCTCCG
EST: GGCATACGACGTCGAGCGGGGCGACTACGAGGAGGAGCACGAACGGAGAG GGACGGTATGGACGGCGACGGCGCACATTGTGACGGCGGTGATCGGCTCCG
genomic: GGCATACGACGTCGAGCGGGGCGACTACGAGGAGGAGCACGAACGGAGAGgtgcgtgccc ... ttcgttccagGGACGGTATGGACGGCGACGGCGCACATTGTGACGGCGGTGATCGGCTCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACCCGGGCGCGTGCACGGGAGACGGGAGTATGGACAAGAGCGCGGTGGCGGCATACGACGTCGAGCGGGGCGACTACGAGGAGGAGCACGAACGGAGAGgtgcgtgccctgtcctgcctcctgtcatccccatggttgggctggggagatcctttccagctggatgggatcggtcaagggcctcggcgattaattctcgcggaatcgcgaatttgttgaccccccttctctcggtttcctgttcgttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA