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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGGATGAGGACGAGTTTCACAAGATTAGGCTGCTCCACTGCGACTTCCTTATCCGCAAGGTGCCCGACCCCGACGACGACGTCTTCGACTTCAGAGAGgtatatgtagccataagacaaccttctcattagtcagtactaccgctgagcttcctagtacaatttgtgacaactgcctgcggtatttcaatctcaccaa...

Basic information

species Zea mays
transcript GRMZM5G829928_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G829928_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g01890.1 (Oryza sativa), 5'ss of exon 1
CGTGGATGAGGACGAGTTTCACAAGATTAGGCTGCTCCACTGCGACTTCCTTATCCGCAAGGTGCCCGACCCCGACGACGACGTCTTCGACTTCAGAGAGgtatatgtagccataagacaaccttctcattagtcagtact------accgc-tgagcttcctagtacaatttgtgacaactgcctgcggtatttcaa--tctcaccaa-----------------------------------------------------------------------------------------
|||  | |||||||| || ||||||||| | || || |||||||||||  |||||||||||||||| ||||||||||||||||||||||||||| | ||||||||  |   |||    |   ||   || ||||   | ||      |  || || | |  | || |    || ||||||     |  | || | |||  |||||  |                                                                                          
CGTCAACGAGGACGAATTCCACAAGATTCGCCTACTGCACTGCGACTTTTTTATCCGCAAGGTGCCTGACCCCGACGACGACGTCTTCGACTTCCGGGAGgtatacatcctcatttatctgtctaa-cactagtacattctttgctaattgcctgtgttatcaagcatgtatt-tgacaatgctatctgttaatgcaacatctcatgacacattcattgcagtgctatccaaattgacagaactcaatcttttaggttgattgaactaaatcatgtgttccttcataatgtgcaacag

upper sequence: GRMZM5G829928_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os12g01950.1 (Oryza sativa), 5'ss of exon 1
CGTGGATGAGGACGAGTTTCACAAGATTAGGCTGCTCCACTGCGACTTCCTTATCCGCAAGGTGCCCGACCCCGACGACGACGTCTTCGACTTCAGAGAGgtatatgtagccataagacaaccttctcattagtcagtactaccgctga--------gcttcctagtaca-atttgtgacaactgcctgcggtatttcaatctcaccaa-----------------------------------------------------------------------------------------
|||  | |||||||| || ||||||||| | || || |||||||| ||  |||||||||||||||| ||||||||||||||||||||||||||| | ||||||||  |  ||||    |   ||   || ||||   | ||   |||          | |  | || |   |||||  |   || ||||          ||||||  |                                                                                          
CGTCAACGAGGACGAATTCCACAAGATTCGCCTACTGCACTGCGATTTTTTTATCCGCAAGGTGCCTGACCCCGACGACGACGTCTTCGACTTCCGGGAGgtatacatc-ccatttatctgtctaa-cactagtacattcttttgctagttgcctgtgttatcaagcatgtatttgacaatgctacctgttcatgcaacatctcatgacacattcattgcagtgctatccaaattgacacaactcaatcttttaggttgtttgaactaaatcatgtgttccttcataatgtgcaacag

upper sequence: GRMZM5G829928_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA04G09200.1 (Glycine max), 5'ss of exon 1
CGTGGATGAGGACGAGTTTCACAAGATTAGGCTGCTCCACTGCGACTTCCTTATCCGCAAGGTGCCCGACCCCGACGACGACGTCTTCGACTTCAGAGAGgtatatgtagccataagacaaccttctcattagtcagtac-taccgctgagcttcctagtacaatttgtgacaactgcctgcggtatttcaatctcaccaa--
  |  | ||||||||||| ||||||||  | ||| || | ||||||||| | || ||||||   |||||||||||| |||| |||| ||| ||||||||||| | |  | || ||| |  |||        | ||  | | |||| ||    ||| | || ||| || | ||   ||  |   | || |   |     |    
AATCAACGAGGACGAGTTCCACAAGATCTGCCTGGTCGATTGCGACTTCTTCATTCGCAAGCCCCCCGACCCCGACAACGATGTCTACGATTTCAGAGAGgtttct--aaccctaataataccacgcttcgaatccatgcatacctcttcttttctttgttcaacttttcaccgttgagttttgaatctttgttcgttcgtag

upper sequence: GRMZM5G829928_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA06G12370.1 (Glycine max), 5'ss of exon 1
CGTGGATGAGGACGAGTTTCACAAGATTAGGCTGCTCCACTGCGACTTCCTTATCCGCAAGGTGCCCGACCCCGACGACGACGTCTTCGACTTCAGAGAGgta-tatgtagccataagacaaccttctcattagtcagtactaccgctgagcttcctagtacaatttgtgacaactgcctgcggtatttcaatctcaccaa
  |  | ||||||||||| ||||||||| | ||| || | ||||||||| | || ||||||   || ||||||||| |||| |||| |||||||||||||||  ||     | ||   ||   |||||  ||  |   |  |   | | | |||   |        |   |    ||   |  |                 
AATCAACGAGGACGAGTTCCACAAGATTTGCCTGGTCGATTGCGACTTCTTCATTCGCAAGCCCCCTGACCCCGACAACGATGTCTACGACTTCAGAGAGgttctacacttcgattctacc-tcttcttcttcttttttgttgttgttcaacttttcaccgttgagttgaatctttgttcgtag-----------------