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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGCACCCGCCGCCGCCTCGTCCCGCGCGCCGCGCATCGCCGAGTGCCTCGTCGGAGACGAGACCGGCGTCATCGTATTCACCGCCCGCAACGACCAAGgtgtgtgtatgtttgtcctgctctccccctccctctatctatctcctctgctgtggatgactagatttcatgatctgccactgctatctgacgacgctac...

Basic information

species Zea mays
transcript GRMZM5G825437_T04
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G825437_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g15520.1 (Oryza sativa), 5'ss of exon 1
-GGCGCACCCGCCGCCGCCTCGTCCCGCGCGCCGCGCATCGCCGAGTGCCTCGTCGGAGACGAGACCGGCGTCATCGTATTCACCGCCCGCAACGACCAAGgtgtgtgtatgtttgtcctgctctccccctccctctatctatct--cctctgctgtggatgactagatttcatgatctgccac---tgctatctgacgacgctac
 || ||  || | |||| |   || ||| |  ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||  ||| ||  | |    || | |   ||      | ||| |    | |||  ||  ||  ||  | | |   | ||| |    || ||| |  ||   ||  
GGGGGCGGCC-CGGCCGTCGGATCTCGCCCCGCGCGCATCGCCGAGTGCCTCGTCGGCGACGAGACCGGGGTCATCGTCTTCACCGCCCGCAACGAGCAAGgtg-atgt-tgcctttttgactttgcgtttctacgagtttatttgatttttgcaatgtttg-ttatttgttaaattttgcaatgtttgttattttgcggatct--

upper sequence: GRMZM5G825437_T04 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA12G33380.1 (Glycine max), 5'ss of exon 1
GGCGCACCCGCCGCCGCCTCGTCCCGCGCGCCGCGCATCGCCGAGTGCCTCGTCGGAGACGAGACCGGCGTCATCGTATTCACCGCCCGCAACGACCAAGgtgtgtgtatgtttgtcctgctctccccctccctctatctatc--tcctctgctgtggatgactagatttcatgatctgccactgctatctgacgacgctac-
||   |||  | |      |  | ||| || ||||||| ||||||||||||||||| ||||| |||||   |||  | |||||||| |||||||| || |||  |   |||||| |  |  | ||  |     |  |  |  |  |  | ||   ||  ||  |   |||  | |  |  ||    ||| ||| |  | |   
GGTCGACCGACGGTGCTAGCCGCGCGCCCGTCGCGCATTGCCGAGTGCCTCGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGGgtacgatgatgtttctttttgtatcgactctgttaaacgttgcgcttttttgtgatgtgtgtttttttttttttaatttgcata--tatttgatg-tgttgaa

upper sequence: GRMZM5G825437_T04 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA13G37050.1 (Glycine max), 5'ss of exon 1
GGCGCACCCGCCGCCGCCT-CGTCCCGCGCGCCGCGCATCGCCGAGTGCCTCGTCGGAGACGAGACCGGCGTCATCGTATTCACCGCCCGCAACGACCAAGgtgtgtgtatgtttgtcctgctctccccctccctctatctatctcctctgctgtggatgactagatttcatgatctgccactgct--atctgacgacgctac
 |  |   || ||  ||   || | ||| || ||||||||||||||||||||||||||||||| |||||   |||  | ||||| || |||||||| || |||  |   |||||| |  |  | || || ||  |  ||||      | || ||||  |   |     |  | || |||   |  |  || ||  ||   || 
-GGTCGATCGTCGGTGCTCGCGGCGCGCCCGTCGCGCATCGCCGAGTGCCTCGTCGGAGACGAAACCGGAACCATAATCTTCACAGCACGCAACGAACAGGgtaagatgatgtttctttttgtgtcgcc-tctgttaatcttcacgttttgttgtgattttttttcccttttaatttgcatatatttgatgtgttgaattta-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28985030|gb|BQ539276.2|BQ539276
EST:     CGTCGGAGACGAGACCGGCGTCATGGTATTCACCGCCCGCAACGACCAAG                         TTGATTTGCTAAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCG
genomic: CGTCGGAGACGAGACCGGCGTCATCGTATTCACCGCCCGCAACGACCAAGgtgtgtgtat ... tcctttgcagTTGATTTGCTGAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCG
EST: gi|16920763|gb|BM074818.1|BM074818
EST:     CGTCGGAGACGAGACCGGCGTCATCGTATTCGCCGCCCGCAACGACCAAG                         TTGATTTGCTGAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCG
genomic: CGTCGGAGACGAGACCGGCGTCATCGTATTCACCGCCCGCAACGACCAAGgtgtgtgtat ... tcctttgcagTTGATTTGCTGAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCG
EST: gi|18164703|gb|BM334542.1|BM334542
EST:     AGACGAGACCGGCGTCATCGTATTCACCGCCCGCAACGACCAAG                         TTGATTTGCTGAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCG
genomic: AGACGAGACCGGCGTCATCGTATTCACCGCCCGCAACGACCAAGgtgtgtgtat ... tcctttgcagTTGATTTGCTGAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCG
EST: gi|18166081|gb|BM335920.1|BM335920
EST:     CGCCCGCAACGACCAAG                         TTGATTTGCTGAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCG
genomic: CGCCCGCAACGACCAAGgtgtgtgtat ... tcctttgcagTTGATTTGCTGAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCG
EST: gi|16920777|gb|BM074825.1|BM074825
EST:     CGTCGGAGACGAGACCGGCGTCATCGTATTCACCGCCCGCAACGACCAAG                         TTGATTTGCTAAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCG
genomic: CGTCGGAGACGAGACCGGCGTCATCGTATTCACCGCCCGCAACGACCAAGgtgtgtgtat ... tcctttgcagTTGATTTGCTGAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCG
EST: gi|18163409|gb|BM333248.1|BM333248
EST:     CGTCGGAGACGAGACCGGCGTCATCGTATTCACCGCCCGCAACGACCAAG                         TTGATTTGCTGAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCG
genomic: CGTCGGAGACGAGACCGGCGTCATCGTATTCACCGCCCGCAACGACCAAGgtgtgtgtat ... tcctttgcagTTGATTTGCTGAAGCCCGATGCCACGGTGATCTTGCGCAATGCCAAAATCG