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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGCGCGCGCCGCCCCCATCGCCGGCAAGGCGGCGGTGCTGCTGCATATTCTCCCGGTCCCCCCTCCGGAGCCACCCTCCCCTTCTCCGGGACCTTGAGgtatttccgtctcccagtgacgctactttttgctgttgcgctggctggattcctgcgtcggtttagcacttcagcttatggcgcgcttgctctggattgt...

Basic information

species Zea mays
transcript GRMZM5G825110_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211033695|gb|FL002056.1|FL002056
EST:     TCTCCCGGTCCCCCCTCCGGAGCCACCCTCCCCTTCTCCGGGACCTTGAG                         TAACTTTGGAGTACCAGTGATGCAAAGGGACACTAGCTCTAGCGATGTTTC
genomic: TCTCCCGGTCCCCCCTCCGGAGCCACCCTCCCCTTCTCCGGGACCTTGAGgtatttccgt ... ttctttttagTAACTTTGGAGTACCAGTGATGCAAAGGGACACTAGCTCTAGCGATGTTTC
EST: gi|78079230|gb|DV507642.1|DV507642
EST:     TCTCCCGGTCCCCCCTCCGGAGCCACCCTCCCCTTCTCCGGGACCTTGAG                         TAACTTTGGAGTACCAGTGATGCAAAGGGACACTAGCTCTAGCGATGTTTC
genomic: TCTCCCGGTCCCCCCTCCGGAGCCACCCTCCCCTTCTCCGGGACCTTGAGgtatttccgt ... ttctttttagTAACTTTGGAGTACCAGTGATGCAAAGGGACACTAGCTCTAGCGATGTTTC
EST: gi|71439838|gb|DR820888.1|DR820888
EST:     TCTCCCGGTCCCCCCTCCGGAGCCACCCTCCCCTTCTCCGGGACCTTGAG                         TAACTTTGGAGTACCAGTGATGCAAAGGGACACTAGCTCTAGCGATGTTTC
genomic: TCTCCCGGTCCCCCCTCCGGAGCCACCCTCCCCTTCTCCGGGACCTTGAGgtatttccgt ... ttctttttagTAACTTTGGAGTACCAGTGATGCAAAGGGACACTAGCTCTAGCGATGTTTC
EST: gi|71426534|gb|DR807584.1|DR807584
EST:     TCTCCCGGTCCCCCCTCCGGAGCCACCCTCCCCTTCTCCGGGACCTTGAG                         TAACTTTGGAGTACCAGTGATGCAAAGGGACACTAGCTCTAGCGATGTTTC
genomic: TCTCCCGGTCCCCCCTCCGGAGCCACCCTCCCCTTCTCCGGGACCTTGAGgtatttccgt ... ttctttttagTAACTTTGGAGTACCAGTGATGCAAAGGGACACTAGCTCTAGCGATGTTTC
EST: gi|76287486|gb|DV027054.1|DV027054
EST:     TCTCCCGGTCCCCCCTCCGGAGCCACCCTCCCCTTCTCCGGGACCTTGAG                         TAACTTTGGAGTACCAGTGATGCAAAGGGACACTAGCTCTAGCGATGTTTC
genomic: TCTCCCGGTCCCCCCTCCGGAGCCACCCTCCCCTTCTCCGGGACCTTGAGgtatttccgt ... ttctttttagTAACTTTGGAGTACCAGTGATGCAAAGGGACACTAGCTCTAGCGATGTTTC
EST: gi|149000638|gb|EE037841.2|EE037841
EST:     TCTCCCGGTCCCCCCTCCGGAGCCACCCTCCCCTTCTCCGGGACCTCGAG                         TAACTTTGGAGTACCAGTGATGCAAAGGGACACTAGCTCTAGCGATGTTTC
genomic: TCTCCCGGTCCCCCCTCCGGAGCCACCCTCCCCTTCTCCGGGACCTTGAGgtatttccgt ... ttctttttagTAACTTTGGAGTACCAGTGATGCAAAGGGACACTAGCTCTAGCGATGTTTC
EST: gi|71426083|gb|DR807133.1|DR807133
EST:     TCTCCCGGTCCCCCCTCCGGAGCCACCCTCCCCTTCTCCGGGACCTTGAG                         TAACTTTGGAGTACCAGTGATGCAAAGGGACACTAGCTCTAGCGATGTTTC
genomic: TCTCCCGGTCCCCCCTCCGGAGCCACCCTCCCCTTCTCCGGGACCTTGAGgtatttccgt ... ttctttttagTAACTTTGGAGTACCAGTGATGCAAAGGGACACTAGCTCTAGCGATGTTTC
EST: gi|93283949|gb|EB676213.1|EB676213
EST:     TCTCCCGGTCCCCCCTCCGGAGCCACCCTCCCCTTCTCCGGGACCTTGAG                         TAACTTTGGAGTACCAGTGATGCAAAGGGACACTAGCTCTAGCGATGTTTC
genomic: TCTCCCGGTCCCCCCTCCGGAGCCACCCTCCCCTTCTCCGGGACCTTGAGgtatttccgt ... ttctttttagTAACTTTGGAGTACCAGTGATGCAAAGGGACACTAGCTCTAGCGATGTTTC
EST: gi|76014867|gb|DT942037.1|DT942037
EST:     TCTCCCGGTCCCCCCTCCGGAGCCACCCTCCCCTTCTCCGGGACCTTGAG                         TAACTTTGGAGTACCAGTGATGCAAAGGGACACTAGCTCTAGCGATGTTTC
genomic: TCTCCCGGTCCCCCCTCCGGAGCCACCCTCCCCTTCTCCGGGACCTTGAGgtatttccgt ... ttctttttagTAACTTTGGAGTACCAGTGATGCAAAGGGACACTAGCTCTAGCGATGTTTC
EST: gi|78121241|gb|DV539625.1|DV539625
EST:     TCTCCCGGTCCCCCCTCCGGAGCCACCCTCCCCTTCTCCGGGACCTTGAG                         AAACTTTGGAGTACCAGTGATGCAAAGGGACACTAGCTCTAGCGATGTTTC
genomic: TCTCCCGGTCCCCCCTCCGGAGCCACCCTCCCCTTCTCCGGGACCTTGAGgtatttccgt ... ttctttttagTAACTTTGGAGTACCAGTGATGCAAAGGGACACTAGCTCTAGCGATGTTTC