1 5' 3' | 2 5' 3' | 3 5' 3' |
CGATGCCCTTATCAGGTTTTGGTGGAAGTGGATCATCTTTTGCATCTGATGATCCATTTTCCTCTAAGGAAGGGCCTCCACAAAATTTCCAACTGTACAGgtatatatttaagtatgttctttttacattttatgctagttcctgattcctgtagtgtctggatagttatttcttggctgatacattgctctgatgtacctgtaaagttcactttgcttccttgtactatgatctaaacagctaacatctttgtgagactaaaaattacattttaaattggtgcag
species | Zea mays |
transcript | GRMZM5G824843_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GATCCATTTTCCTCTAAGGAAGGGCCTCCACAAAATTTCCAACTGTACAG CTGGGAGACCTATCAGCCTGTTAGTGGCCTACTTGCACAACCTGAGTGGACEST: gi|71428569|gb|DR809619.1|DR809619
genomic: GATCCATTTTCCTCTAAGGAAGGGCCTCCACAAAATTTCCAACTGTACAGgtatatattt ... attggtgcagCTGGGAGACCTATCAGCCTGTTAGTGGCCTACTTGCACAACCTGAGTGGAC
EST: GATCCATTTTCCTCTAAGGAAGGGCCTCCACAAAATTTCCAACTGTACAG CTGGGAGACCTATCAGCCTGTTAGTGGCCTACTTGCACAACCTGAGTGGACEST: gi|211541871|gb|FL034147.1|FL034147
genomic: GATCCATTTTCCTCTAAGGAAGGGCCTCCACAAAATTTCCAACTGTACAGgtatatattt ... attggtgcagCTGGGAGACCTATCAGCCTGTTAGTGGCCTACTTGCACAACCTGAGTGGAC
EST: GATCCATTTTCCTCTAAGGAAGGGCCTCCACAAAATTTCCAACTGTACAG CTGGGAGACCTATCAGCCTGTTAGTGGCCTACTTGCACAACCTGAGTGGAC
genomic: GATCCATTTTCCTCTAAGGAAGGGCCTCCACAAAATTTCCAACTGTACAGgtatatattt ... attggtgcagCTGGGAGACCTATCAGCCTGTTAGTGGCCTACTTGCACAACCTGAGTGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATGCCCTTATCAGGTTTTGGTGGAAGTGGATCATCTTTTGCATCTGATGATCCATTTTCCTCTAAGGAAGGGCCTCCACAAAATTTCCAACTGTACAGgtatatatttaagtatgttctttttacattttatgctagttcctgattcctgtagtgtctggatagttatttcttggctgatacattgctctgatgtacctgtaaagttcactttgcttccttgtactatgatctaaacagctaacatctttgtgagactaaaaattacattttaaattggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA