Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCGTCAAGTTAGAGAGCCCGCACCTCGCGGAGCTCGACCTCGCCCCCCACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccggatcgcctctagcctgcgtgatgtgtgcgcggagcggatttttgattcgtttcgtttttttttccacgcag

Basic information

species Zea mays
transcript GRMZM5G824405_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G824405_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g18310.1 (Oryza sativa), 5'ss of exon 1
CTCCGTCAAGTTAGAGAGCCCGCACCTCGCGGAGCTCGACCTCGCCCCCCACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccggatcgcc--tctagcctgcgtgatg---tgtgcgcggagcggatttttgattcgtttcgtttttttttccacgcag-------------
 ||| ||||| | ||| ||||||  ||||| ||| | | ||||| ||| ||| |||||||||| ||||| || || ||| |||||||||||| ||||||||| |||||| |||| ||  |||||   |||||      |||    || |||  |||| |||  |||| | || || |||  |                 
GTCCATCAAGCTGGAGTGCCCGCGACTCGCTGAGATGGGCCTCGTCCCGCACGTCTTCGGCTCGCACCCAGTCGCCGGCGCGTGGGACCCCTCCAAGGCCgtgagctccagatcccccctctagttcgcgtggcactttgtttctggtgcgagtttt-gatgtgttttgcttcttcttcttcttcttttttgtttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211455006|gb|FK979208.1|FK979208
EST:     ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCC                         CTGCCTTTGGAGCGGGCGGCCACCGCNGTGTGGGAGTTCAGCTGCGTCGTG
genomic: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccg ... ttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
EST: gi|211452890|gb|FK979205.1|FK979205
EST:     ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCC                         CTGCCTTTGGAGCGGGCGGCCACCG-CGTGTGGGAGTTCAGCTGCGTCGTG
genomic: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccg ... ttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
EST: gi|211452892|gb|FK979207.1|FK979207
EST:     ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCC                         CTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
genomic: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccg ... ttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
EST: gi|211455013|gb|FK979215.1|FK979215
EST:     ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCC                         CTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
genomic: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccg ... ttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
EST: gi|211452887|gb|FK979202.1|FK979202
EST:     ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCC                         CTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
genomic: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccg ... ttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
EST: gi|211452889|gb|FK979204.1|FK979204
EST:     ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCC                         CTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
genomic: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccg ... ttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
EST: gi|211455010|gb|FK979212.1|FK979212
EST:     ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCC                         CTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
genomic: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccg ... ttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
EST: gi|211455012|gb|FK979214.1|FK979214
EST:     ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCC                         CTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
genomic: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccg ... ttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
EST: gi|211452886|gb|FK979201.1|FK979201
EST:     ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCC                         CTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
genomic: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccg ... ttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
EST: gi|211455009|gb|FK979211.1|FK979211
EST:     ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCC                         CTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
genomic: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccg ... ttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
EST: gi|211452891|gb|FK979206.1|FK979206
EST:     ACCTCTTCGGCTCCCACCCTGT-GCTGGCTCGTGGGACCCCTGCAA-GCC                         CTGCCTTTGGAGCGGGCGGCCACCG-CGTGTGGGAGTTCAGCTGCGTCGTG
genomic: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccg ... ttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
EST: gi|211455008|gb|FK979210.1|FK979210
EST:     ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCC                         CTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG
genomic: ACCTCTTCGGCTCCCACCCTGTGGCTGGCTCGTGGGACCCCTGCAAGGCCgtaagctccg ... ttccacgcagCTGCCTTTGGAGCGGGCGGCCACCGCCGTGTGGGAGTTCAGCTGCGTCGTG