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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGTGAGGAGGAAGGGGGATCCATGGCGGCGGAGAACGAGGAGAAGGAGACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAGgcaaggcccgcagctctcctttccttttttttcttttcttctttccccccacctgttcgatcgagccagtgcgtgatggatgatgggtgatggtctctcgccgccgcgctctccttcctcctcctgctgcactgcag

Basic information

species Zea mays
transcript GRMZM5G822098_T05
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71301370|gb|DR786720.1|DR786720
EST:     ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAG                         CGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
genomic: ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAGgcaaggcccg ... tgcactgcagCGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
EST: gi|71428081|gb|DR809131.1|DR809131
EST:     ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAG                         CGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
genomic: ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAGgcaaggcccg ... tgcactgcagCGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
EST: gi|149005489|gb|EE040047.2|EE040047
EST:     ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAG                         CGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
genomic: ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAGgcaaggcccg ... tgcactgcagCGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
EST: gi|37422903|gb|CF649167.1|CF649167
EST:     ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAG                         CGCATTGTACCAGCTGCATTTGGTGAACGCGTCCACGGCGCGGGCCTTCGT
genomic: ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAGgcaaggcccg ... tgcactgcagCGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
EST: gi|28986606|gb|CB351219.1|CB351219
EST:     ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAG                         CGCTTTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
genomic: ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAGgcaaggcccg ... tgcactgcagCGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
EST: gi|211170193|gb|FL324191.1|FL324191
EST:     ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAG                         CGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
genomic: ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAGgcaaggcccg ... tgcactgcagCGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
EST: gi|18174795|gb|BM350183.1|BM350183
EST:     ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAG                         CGCTTTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
genomic: ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAGgcaaggcccg ... tgcactgcagCGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
EST: gi|211495487|gb|FL010711.1|FL010711
EST:     ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAG                         CGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
genomic: ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAGgcaaggcccg ... tgcactgcagCGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
EST: gi|18167896|gb|BM337736.1|BM337736
EST:     ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAG                         CGCTTTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
genomic: ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAGgcaaggcccg ... tgcactgcagCGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
EST: gi|148966448|gb|EE017455.2|EE017455
EST:     ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAG                         CGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT
genomic: ACGGCCTGCGCGGGGTACAAGCACGGGCCGCCATGGGTGTTCAAAGGCAGgcaaggcccg ... tgcactgcagCGCATTGTACCAGCTGCATTTGGTGAAGGCGTCGACGGCGCGGGCCTTCGT