1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCCCCTCCCCTGCGCCGTCGGGATGTACATGCCGCCGCCGCCGCCCACCGGCGGCGCCGGCGAGCAGCCTAGGCTTTACCAGGTCTGGCGGGGAAGCAACgtaagaaatttctacctgccacccgctcttcctctccccatatgcagtgatccgtgagatgttgatggaagtgtaataatcgattttgctcagtacctgt...
species | Zea mays |
transcript | GRMZM5G821611_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGGCGCCGGCGAGCAGCCTAGGCTTTACCAGGTCTGGCGGGGAAGCAAC GAATTCTTCTTGCAGGGAAGATTCATATTTGGGCCTGATGTGAGATCTGTGEST: gi|149089592|gb|EE178843.2|EE178843
genomic: GCGGCGCCGGCGAGCAGCCTAGGCTTTACCAGGTCTGGCGGGGAAGCAACgtaagaaatt ... ccgtttgcagGAATTCTTCTTGCAGGGAAGATTCATATTTGGGCCTGATGTGAGATCTGTG
EST: GCGGCGCCGGCGAGCAGCCTAGGCTTTACCAGGTCTGGCGGGGAAGCAAC GAATTCTTCTTGCAGGGAAGATTCATATTTGGGCCTGATGTGAGATCTGTGEST: gi|149087864|gb|EE177142.2|EE177142
genomic: GCGGCGCCGGCGAGCAGCCTAGGCTTTACCAGGTCTGGCGGGGAAGCAACgtaagaaatt ... ccgtttgcagGAATTCTTCTTGCAGGGAAGATTCATATTTGGGCCTGATGTGAGATCTGTG
EST: GCGGCGCCGGCGAGCAGCCTAGGCTTTACCAGGTCTGGCGGGGAAGCAAC GAATTCTTCTTGCAGGGAAGATTCATATTTGGGCCTGATGTGAGATCTGTGEST: gi|71313270|gb|DR793166.1|DR793166
genomic: GCGGCGCCGGCGAGCAGCCTAGGCTTTACCAGGTCTGGCGGGGAAGCAACgtaagaaatt ... ccgtttgcagGAATTCTTCTTGCAGGGAAGATTCATATTTGGGCCTGATGTGAGATCTGTG
EST: GCGGCGCCGGCGAGCAGCCTAGGCTTTACCAGGTCTGGCGGGGAAGCAAC GAATTCTTCTTGCAGGGAAGATTCATATTTGGGCCTGATGTGAGATCTGTG
genomic: GCGGCGCCGGCGAGCAGCCTAGGCTTTACCAGGTCTGGCGGGGAAGCAACgtaagaaatt ... ccgtttgcagGAATTCTTCTTGCAGGGAAGATTCATATTTGGGCCTGATGTGAGATCTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCCCTCCCCTGCGCCGTCGGGATGTACATGCCGCCGCCGCCGCCCACCGGCGGCGCCGGCGAGCAGCCTAGGCTTTACCAGGTCTGGCGGGGAAGCAACgtaagaaatttctacctgccacccgctcttcctctccccatatgcagtgatccgtgagatgttgatggaagtgtaataatcgattttgctcagtacctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctctccc