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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATACCTTCCTTCAAGATCTACCGCGGTGTCGCGGGGCTCTACGACTACGGGCCGCCCGGGTGCCGCGTTAAGGCCAACGTGCTTTCCTTCTGGCGTCAGgtgatgcccgcgatctgtctctgaatgctttggatttgttttcgcctgtagtttcgtcttagctgttgtgcgtggtcgctgcacgtcagcgattgtgaca...

Basic information

species Zea mays
transcript GRMZM5G821551_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G821551_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os08g42560.1 (Oryza sativa), 5'ss of exon 1
CATACCTTCCTTCAAGATCTACCGCGGTGTCGCGGGGCTCTACGACTACGGGCCGCCCGGGTGCCGCGTTAAGGCCAACGTGCTTTCCTTCTGGCGTCAGgtgatgcc-cgc---gatctgtctc-tgaatgct--ttggatttgttttcgcctgt--agtttcgtc-ttagctgttgtgcgtggtcgctgcacgtcagcgattgtgaca
||| ||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||| || |||  ||| ||||||||||||||  |||||||| | ||||| | ||| ||    || |  ||||   |||  |   ||   |||||  ||| |||  ||||   || || |   ||    ||   ||  |   ||              
CATCCCTTCCTTCAAGATCTACCGCGGCGTCGCCGGGCTGTACGACTACGGCCCGCCGGGATGCGCCGTCAAGGCCAACGTGCTCGCCTTCTGGAGGCAGgtcaggccgcgagcggagccatctcacaaatattacctgttgttgttcacgcttgttcagttcattcgttggggattaaatgtatccgaagtttgtttag----------

upper sequence: GRMZM5G821551_T03 (Zea mays), 5'ss of exon 1
lower sequence: Vv01s0150g00150.t01 (Vitis vinifera), 5'ss of exon 1
CATACCTTCCTTCAAGATCTACCGCGGTGTCGCGGGGCTCTACGACTACGGGCCGCCCGGGTGCCGCGTTAAGGCCAACGTGCTTTCCTTCTGGCGTCAGgtgatgcccgcgatctgtctctgaatgctttggatttgttttcgcctgtagtttcgtcttagctgttgtgcgtggtcgctgcacgtcagcgattgtgaca-
||| ||||| ||||||||||||||||| ||||| || || ||||||||||| ||||| || |||  ||| ||||||||||| ||  | |||||||||||||| ||||    |   ||||   ||  | || | | ||  |  |   |  |        || | |         || |  || |  | |       |  || 
CATTCCTTCTTTCAAGATCTACCGCGGCGTCGCTGGACTTTACGACTACGGACCGCCGGGATGCGCCGTCAAGGCCAACGTCCTCGCTTTCTGGCGTCAGgt-atgcagcggcagtgtcggagatcgattcgcagtttctaactgatcaaacccatatttcgtttacaaattgggactgtgaatcttaatttgaattgcaa

upper sequence: GRMZM5G821551_T03 (Zea mays), 5'ss of exon 1
lower sequence: Vv17s0000g00160.t01 (Vitis vinifera), 5'ss of exon 1
CATACCTTCCTTCAAGATCTACCGCGGTGTCGCGGGGCTCTACGACTACGGGCCGCCCGGGTGCCGCGTTAAGGCCAACGTGCTTTCCTTCTGGCGTCAGgtga---tgcccgcgatctgtctctgaatgctttggatttgttttcgcctgtagtttcgtcttagctgttgtgcgtggtcgctgcacgtcagcgattgtgaca
|||||| |||||||||||||| || || ||||| || || |||||||| || || ||||| |||  ||| ||| |||| || ||  |||||||||||||||| |   |  |   ||| | | |    ||  |    |         ||   |  ||  ||   ||||||     |   | | |   | | |   ||   |   
CATACCCTCCTTCAAGATCTATCGTGGGGTCGCCGGCCTTTACGACTATGGCCCTCCCGGTTGCGCCGTCAAGTCCAATGTTCTCGCCTTCTGGCGTCAGgttaatttttctttgatttctattactattttggaaagaaaaacatgctcctttttaggttcaagctgtaaactgaacttggtcagctttaattatatag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30031893|gb|CB833744.1|CB833744
EST:     GGCCGCCCGGGTGCCGCGTTAAGGCCAACGTGCTTTCCTTCTGGCGTCAG                         CACTTTGTTTTGGAAGAGAACATGTTGGAGGTTGACTGCCCCTGTGTGACG
genomic: GGCCGCCCGGGTGCCGCGTTAAGGCCAACGTGCTTTCCTTCTGGCGTCAGgtgatgcccg ... ttctctccagCACTTTGTTTTGGAAGAGAACATGTTGGAGGTTGACTGCCCCTGTGTGACG