1 5' 3' | 2 5' 3' | 3 5' 3' |
TCTACCGGCGGCGGCGACGAGATGGTGCAGCGCCTCACCTACCGAAAGCGTCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAGgttcgccccatctggtcgttcctgctcgatctgggcgcagtctggtttcttgatctgtatcgcgctcttggttgtattgatggcttcgctggatttttgcag
species | Zea mays |
transcript | GRMZM5G820996_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCACAGCTACGCGACNNVATCCAATCAGACCCGGGTCGTGAAGACCC-AG GTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGTEST: gi|30088131|gb|CB886336.1|CB886336
genomic: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAGgttcgcccca ... atttttgcagGTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGT
EST: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAG GTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGTEST: gi|15589458|gb|BI674074.1|BI674074
genomic: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAGgttcgcccca ... atttttgcagGTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGT
EST: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAG GTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGTEST: gi|211533045|gb|FL043888.1|FL043888
genomic: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAGgttcgcccca ... atttttgcagGTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGT
EST: CACAGCTACGCGACAAAATCCAATCASRACCCGGGTTGTGAAGACCCCAG GTGGGAAGCTTGTGTACCAEST: gi|211352603|gb|FL470915.1|FL470915
genomic: CACAGCTACGCGACAAAATCCAATCAG-ACCCGGGTCGTGAAGACCCCAGgttcgcccca ... atttttgcagGTGGGAAGCTTGTGTACCA
EST: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAG GTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGTEST: gi|211533048|gb|FL043891.1|FL043891
genomic: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAGgttcgcccca ... atttttgcagGTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGT
EST: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAG GTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGTEST: gi|60348609|gb|DN215582.1|DN215582
genomic: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAGgttcgcccca ... atttttgcagGTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGT
EST: TCACAGTTACGGGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAG GTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGTEST: gi|31405586|gb|CD484318.1|CD484318
genomic: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAGgttcgcccca ... atttttgcagGTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGT
EST: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAG GTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGTEST: gi|211530048|gb|FL043882.1|FL043882
genomic: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAGgttcgcccca ... atttttgcagGTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGT
EST: SACAGCTACGCGACAAAATCCAATCARKACCCGGGTCGTGAAGACCCCAG GTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGTEST: gi|15313100|gb|BI478560.1|BI478560
genomic: CACAGCTACGCGACAAAATCCAATCA-GACCCGGGTCGTGAAGACCCCAGgttcgcccca ... atttttgcagGTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGT
EST: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAG GTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGTEST: gi|211533047|gb|FL043890.1|FL043890
genomic: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAGgttcgcccca ... atttttgcagGTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGT
EST: TACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAG GTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGTEST: gi|30306493|gb|CD001166.1|CD001166
genomic: TACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAGgttcgcccca ... atttttgcagGTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGT
EST: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAG GTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGTEST: gi|60357248|gb|DN224221.1|DN224221
genomic: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAGgttcgcccca ... atttttgcagGTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGT
EST: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAG GTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGTEST: gi|26557730|gb|CA829965.1|CA829965
genomic: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAGgttcgcccca ... atttttgcagGTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGT
EST: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAG GTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGTEST: gi|60395053|gb|DN227922.1|DN227922
genomic: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAGgttcgcccca ... atttttgcagGTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGT
EST: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAG GTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGTEST: gi|16927550|gb|BM080619.1|BM080619
genomic: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAGgttcgcccca ... atttttgcagGTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGT
EST: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAG GTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGTEST: gi|211533046|gb|FL043889.1|FL043889
genomic: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAGgttcgcccca ... atttttgcagGTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGT
EST: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAG GTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGTEST: gi|60345851|gb|DN212824.1|DN212824
genomic: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAGgttcgcccca ... atttttgcagGTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGT
EST: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAG GTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGTEST: gi|60354426|gb|DN221399.1|DN221399
genomic: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAGgttcgcccca ... atttttgcagGTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGT
EST: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAG GTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGTEST: gi|30087140|gb|CB885348.1|CB885348
genomic: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAGgttcgcccca ... atttttgcagGTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGT
EST: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAG GTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGT
genomic: TCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAGgttcgcccca ... atttttgcagGTGGGAAGCTTGTGTACCAATACACCAAGAAGAGGGCGAGCGGTCCCAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTACCGGCGGCGGCGACGAGATGGTGCAGCGCCTCACCTACCGAAAGCGTCACAGCTACGCGACAAAATCCAATCAGACCCGGGTCGTGAAGACCCCAGgttcgccccatctggtcgttcctgctcgatctgggcgcagtctggtttcttgatctgtatcgcgctcttggttgtattgatggcttcgctggatttttgcag
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