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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCTTTTCTCGTTCCCCGCGCCTTGCAGGCCGCCCCCCCGACCTTTTCTCCGGCGTTGCCGCTACCTCCCTGCCTCCCCGCCTCAACGCCGGTGATGAGgtaacgacagtccacaggctaatctcacctaccggtcaccacggcgtaaccctaggtcacagttccgttttgaacctattttgaatcgcacgactcgttt...

Basic information

species Zea mays
transcript GRMZM5G817551_T04
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211189626|gb|FL285303.1|FL285303
EST:     CCGGCGTTGCCGCTACCTCCCTGCCTCCCCGCCTCAACGCCGGTGATGAG                         CTATTCAAGTGCATTTACAAGTGTACATGGAGAGAGGCCTTCATCAGAATA
genomic: CCGGCGTTGCCGCTACCTCCCTGCCTCCCCGCCTCAACGCCGGTGATGAGgtaacgacag ... ttatttgtagCTATTCAAGTGCATTTACAAGTGTACATGGAGAGAGGCCTTCATCAGAATA
EST: gi|71314002|gb|DR793613.1|DR793613
EST:     CCGGCGTTGCCGCTACCTCCCTGCCTCCCCGCCTCAACGCCGGTGATGAG                         CTATTCAAGTGCATTTACAAGTGTACATGGAGAGAGGCCTTCATCAGAATA
genomic: CCGGCGTTGCCGCTACCTCCCTGCCTCCCCGCCTCAACGCCGGTGATGAGgtaacgacag ... ttatttgtagCTATTCAAGTGCATTTACAAGTGTACATGGAGAGAGGCCTTCATCAGAATA
EST: gi|101388188|gb|EB816108.1|EB816108
EST:     CCGGCGTTGCCGCTACCTCCCTGCCTCCCCGCCTCAACGCCGGTGATGAG                         CTATTCAAGTGCATTTACAAGTGTACATGGAGAGAGGCCTTCATCAGAATA
genomic: CCGGCGTTGCCGCTACCTCCCTGCCTCCCCGCCTCAACGCCGGTGATGAGgtaacgacag ... ttatttgtagCTATTCAAGTGCATTTACAAGTGTACATGGAGAGAGGCCTTCATCAGAATA