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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGATGGACGGTGCTGCAGTGGTCAAGCTGATGTCCGGCGAGGCTGGGTATGTCTTAGAAGACGTGCCGCACGTGTCAGACTACCTCCCCGATCTCCCGgtgagtaccggcgatccgtgcgaaggtgatcgatctggtgtttgacgcggtgaatggttgattgaatgatcggtcgttgttgctcgaggagacgagggcg...

Basic information

species Zea mays
transcript GRMZM5G816636_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G816636_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os06g05860.1 (Oryza sativa), 5'ss of exon 1
GGCGATGGACGGTGCTGCA-GTGGTCAAGCTGATGTCCGGCGAGGCTGGGTATGTCTTAGAAGACGTGCCGCACGTGTCAGACTACCTCCCCGATCTCCCGgtgagtaccggcgatccgtgcgaaggtgatcgatctggtgtttgacgcggtgaatggttgattgaatgatcggtcgttgttgctcgaggagacgagggcg--
||||  || ||| |  ||  | ||| |||||| || |||| || |  ||||| ||  | || ||||||||||| ||||  ||||||||||||||||| |||||||||  | ||     |  ||   ||   |      | ||| ||  || |    || |    |   |   ||  |  |  |   | |    |   ||||  
GGCGGCGG-CGGCGAAGCCCGAGGTGAAGCTGGTGACCGGGGATGGCGGGTACGTGCTCGAGGACGTGCCGCATGTGTGCGACTACCTCCCCGATCTACCGgtgagtctccgccgcttgc-cggccgtctcctcctctgcgttggat-cgatctggggattggggttgggaggggaggggaagggagggattgccgcggcgct