1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGACGTGGCGAGGGATGCGCGTGAACTACCTCGCCAGAGGACAGGGGCCGCCCGTACTGCTCGTCCACGGCTTCGGCGCCTCCGTCGCGCACTGGCGCAGgtgagccggccttgtccgtccgcccccttgatcgatcataatcttctgatgaaaccttacctgggctcaacgcgcgaccgttggtgcacgcacgccatgtgctcgagcttgtgcctctgcatgcgccaaccattgctgggaacattgatcaactcgcttggtag
species | Zea mays |
transcript | GRMZM5G815808_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCGTACTGCTCGTCCACGGCTTCGGCGCCTCCGTCGCGCACTGGCGCAG GAACATTGGGGTGTTGTCTGAATCCTATACCGTCTACGCGATCGATTTGCTEST: gi|76921897|gb|DV168756.1|DV168756
genomic: CCCGTACTGCTCGTCCACGGCTTCGGCGCCTCCGTCGCGCACTGGCGCAGgtgagccggc ... cgcttggtagGAACATTGGGGTGTTGTCTGAATCCTATACCGTCTACGCGATCGATTTGCT
EST: CCCGTACTGCTCGTCCACGGCTTCGGCGCCTCCGTCGCGCACTGGCGCAG GAACATTGGGGTGTTGTCTGAATCCTATACCGTCTACGCGATCGATTTGCTEST: gi|148953644|gb|EC899002.2|EC899002
genomic: CCCGTACTGCTCGTCCACGGCTTCGGCGCCTCCGTCGCGCACTGGCGCAGgtgagccggc ... cgcttggtagGAACATTGGGGTGTTGTCTGAATCCTATACCGTCTACGCGATCGATTTGCT
EST: CCCGTACTGCTCGTCCACGGCTTCGGCGCCTCCGTCGCGCACTGGCGCAG GAACATTGGGGTGTTGTCTGAATCCTATACCGTCTACGCGATCGATTTGCTEST: gi|211481120|gb|FL012850.1|FL012850
genomic: CCCGTACTGCTCGTCCACGGCTTCGGCGCCTCCGTCGCGCACTGGCGCAGgtgagccggc ... cgcttggtagGAACATTGGGGTGTTGTCTGAATCCTATACCGTCTACGCGATCGATTTGCT
EST: CCCGTACTGCTCGTCCACGGCTTCGGCGCCTCCGTCGCGCACTGGCGCAG GAACATTGGGGTGTTGTCTGAATCCTATACCGTCTACGCGATCGATTTGCTEST: gi|50324299|gb|CO519425.1|CO519425
genomic: CCCGTACTGCTCGTCCACGGCTTCGGCGCCTCCGTCGCGCACTGGCGCAGgtgagccggc ... cgcttggtagGAACATTGGGGTGTTGTCTGAATCCTATACCGTCTACGCGATCGATTTGCT
EST: CCCGTACTGCTCGTCCACGGCTTCGGCGCCTCCGTCGCGCACTGGCGCAG GAACATTGGGGTGTTGTCTGAATCCTATACCGTCTACGCGATCGATTTGCTEST: gi|148987321|gb|EE031161.2|EE031161
genomic: CCCGTACTGCTCGTCCACGGCTTCGGCGCCTCCGTCGCGCACTGGCGCAGgtgagccggc ... cgcttggtagGAACATTGGGGTGTTGTCTGAATCCTATACCGTCTACGCGATCGATTTGCT
EST: CCCGTACTGCTCGTCCACGGCTTCGGCGCCTCCGTCGCGCACTGGCGCAG GAACATTGGGGTGTTGTCTGAATCCTATACCGTCTACGCGATCGATTTGCTEST: gi|13177894|gb|BG349077.1|BG349077
genomic: CCCGTACTGCTCGTCCACGGCTTCGGCGCCTCCGTCGCGCACTGGCGCAGgtgagccggc ... cgcttggtagGAACATTGGGGTGTTGTCTGAATCCTATACCGTCTACGCGATCGATTTGCT
EST: CCCGTACTGCTCGTCCACGGCTTCGGCGCCTCCGTCGCGCACTGGCGCAG GAACATTGGGGTGTTGTCTGAATCCTATACCGTCTACGCGATCGATTTGCTEST: gi|78117039|gb|DV535426.1|DV535426
genomic: CCCGTACTGCTCGTCCACGGCTTCGGCGCCTCCGTCGCGCACTGGCGCAGgtgagccggc ... cgcttggtagGAACATTGGGGTGTTGTCTGAATCCTATACCGTCTACGCGATCGATTTGCT
EST: CCCGTACTGCTCGTCCACGGCTTCGGCGCCTCCGTCGCGCACTGGCGCAG GAACATTGGGGTGTTGTCTGAATCCTATACCGTCTACGCGATCGATTTGCTEST: gi|149084467|gb|EE173925.2|EE173925
genomic: CCCGTACTGCTCGTCCACGGCTTCGGCGCCTCCGTCGCGCACTGGCGCAGgtgagccggc ... cgcttggtagGAACATTGGGGTGTTGTCTGAATCCTATACCGTCTACGCGATCGATTTGCT
EST: CCCGTACTGCTCGTCCACGGCTTCGGCGCCTCCGTCGCGCACTGGCGCAG GAACATTGGGGTGTTGTCTGAATCCTATACCGTCTACGCGATCGATTTGCT
genomic: CCCGTACTGCTCGTCCACGGCTTCGGCGCCTCCGTCGCGCACTGGCGCAGgtgagccggc ... cgcttggtagGAACATTGGGGTGTTGTCTGAATCCTATACCGTCTACGCGATCGATTTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACGTGGCGAGGGATGCGCGTGAACTACCTCGCCAGAGGACAGGGGCCGCCCGTACTGCTCGTCCACGGCTTCGGCGCCTCCGTCGCGCACTGGCGCAGgtgagccggccttgtccgtccgcccccttgatcgatcataatcttctgatgaaaccttacctgggctcaacgcgcgaccgttggtgcacgcacgccatgtgctcgagcttgtgcctctgcatgcgccaaccattgctgggaacattgatcaactcgcttggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGCCTCCG