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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGCCACCACCTGCCAACCTTTCAGTTGATATTCGTGCATGTCATCGAATCATTGGTTTTTGTGCCGgtaatgggaaatattctttggcgttttggagtatttgtagtttgtgatgaaaatacattcgctgcagaattcaccaaacttctatattagctcactcattattttgttctgatctttgtag

Basic information

species Zea mays
transcript GRMZM5G814310_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G814310_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g45770.1 (Oryza sativa), 5'ss of exon 10
------------------CACGCCACCACCTGCCAACCTTTCAGTTGATATTCGTGCATGTCATCGAATCATTGGTTTTTGTGCCGgtaatgggaaatatt--ctttggcgttttggagtatttgtagtttgtgatgaaaatacattcgctgcagaattcaccaaacttctatattagctcactcattattttgttctgatctttgtag
                  |||||||||| || || || |||||  ||||||| || ||||| |||||||||||||||||||| |||||| ||  |  | ||  | ||   |   || |   ||||| | |     |  | ||  ||   ||        || || | ||||    || || ||| |||  |||||| ||||| ||| ||
TGCAGCTTCAACATCATGCACGCCACCAACTCCCCACATTTCAACTGATATTTGTCCATGTTATCGAATCATTGGTTTTTGTTCCGgta-tgatattttttttccttaatgagctgaaaattttgtggct----gtttagatgtatctact--------caacagatttctca--tatcttactaatttctttgttgtgatcattgcag