1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACTACCCCAAGTCGCCGCTGAGCCACTCTCTCCGTCCGCGAATCCGTAAATGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatcgcagcaccttcctccgctcgtcgccatcctggcgctaatgattcttgaaataatcgagtttggtgccaatgtctccgtagagggggaaag...
species | Zea mays |
transcript | GRMZM5G813143_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: YGGAAGGGGACGAAATGCTCAGGGTGAAGCYCGGCAGGCAGGGCCTTGAG GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCEST: gi|78105722|gb|DV524140.1|DV524140
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCC
EST: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCCEST: gi|211292715|gb|FL410160.1|FL410160
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTACCCCAAGTCGCCGCTGAGCCACTCTCTCCGTCCGCGAATCCGTAAATGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatcgcagcaccttcctccgctcgtcgccatcctggcgctaatgattcttgaaataatcgagtttggtgccaatgtctccgtagagggggaaag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgccatcc