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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTACCCCAAGTCGCCGCTGAGCCACTCTCTCCGTCCGCGAATCCGTAAATGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatcgcagcaccttcctccgctcgtcgccatcctggcgctaatgattcttgaaataatcgagtttggtgccaatgtctccgtagagggggaaag...

Basic information

species Zea mays
transcript GRMZM5G813143_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78114483|gb|DV532872.1|DV532872
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|211148661|gb|FL386504.1|FL386504
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|211392366|gb|FL377419.1|FL377419
EST:     YGGAAGGGGACGAAATGCTCAGGGTGAAGCYCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCC
EST: gi|211093061|gb|FL420432.1|FL420432
EST:     TGGAAGGGGACGAAATGCTCAGGGTTAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|211059839|gb|FL382527.1|FL382527
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|74244513|gb|DT652427.1|DT652427
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|211448350|gb|FL416391.1|FL416391
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|211319782|gb|FL419331.1|FL419331
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|211232220|gb|FL409286.1|FL409286
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|88756482|gb|DY540623.1|DY540623
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|91873437|gb|EB403394.1|EB403394
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|78112032|gb|DV530428.1|DV530428
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|211496817|gb|FL406830.1|FL406830
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|88757821|gb|DY541962.1|DY541962
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|76021184|gb|DT948354.1|DT948354
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|211212953|gb|FL427987.1|FL427987
EST:     TGGAAGGGGACGAAATGCTCAGGGTTAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|78085303|gb|DV513696.1|DV513696
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|76288052|gb|DV027620.1|DV027620
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|91055988|gb|EB166406.1|EB166406
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|211358031|gb|FL393768.1|FL393768
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|88747189|gb|DY531330.1|DY531330
EST:     TGGAAGGGGACAAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACCCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|91877299|gb|EB407256.1|EB407256
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|211534021|gb|FL424331.1|FL424331
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|211292715|gb|FL410160.1|FL410160
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|74244046|gb|DT651960.1|DT651960
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|211247446|gb|FL396985.1|FL396985
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|89762828|gb|DY690268.1|DY690268
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|211368675|gb|FL393825.1|FL393825
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|89761102|gb|DY689251.1|DY689251
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|78087084|gb|DV515477.1|DV515477
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|101392434|gb|EB818146.1|EB818146
EST:     GGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: GGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|60396606|gb|DN229475.1|DN229475
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|91875443|gb|EB405400.1|EB405400
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
EST: gi|211437107|gb|FL416888.1|FL416888
EST:     TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAG                         GTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC
genomic: TGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatc ... tgaaatgcagGTGTCCAAGCTTGGCTTCGGGTGCATGGGCCTCACTGGAGTGTACAACGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTACCCCAAGTCGCCGCTGAGCCACTCTCTCCGTCCGCGAATCCGTAAATGGAAGGGGACGAAATGCTCAGGGTGAAGCTCGGCAGGCAGGGCCTTGAGgtaaacgatcgcagcaccttcctccgctcgtcgccatcctggcgctaatgattcttgaaataatcgagtttggtgccaatgtctccgtagagggggaaag

- - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC