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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGCAGGGCGGCGCGGTCCCGGTGAGCGAGATGTTCGGCACGTTTGCGCTCTTCGTCGGCGCGGCGGTACGCGGCGGTCCTTGGCAgctcagctctatctccaactttttttcctttcctgacgtgaaactgggctgacttccctgggcgcgtccgtgcag

Basic information

species Zea mays
transcript GRMZM5G811220_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G811220_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g48880.1 (Oryza sativa), 5'ss of exon 2
ACTGCAGGGCGGCGCGGTCCCGGTGAGCGAGATGTTCGGCACGTTTGCGCTCTTCGTCGGCGCGGCGGTACGCGGCGGTC-CTTGGCAgctcagctctatct-ccaactttttttcctttcctgacgt-gaaactgggctgactt----ccctgggcgcgtccgtgcag
       ||||| |  || ||| ||| ||||||||| |||||||||||||||| ||||||||| |||||| ||||| ||  |   |||    | | || | | |   ||  |       |   || ||  ||| |  ||| | ||    | || |  | |    |||||
-------GGCGGGGATGTGCCGATGACCGAGATGTTTGGCACGTTTGCGCTCTCCGTCGGCGCAGCGgtaagcggccgtgacaccgcaaa--atccctgtttgctcgctgataacgtccttgggatgtcaaaattttgcttaattttgacgctcgctggggggttgcag