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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGGAGGCGCTTGCTGCATTGGCCCTAGAGCACACGGATCTTCTCACGACCTACAAATCCTCTTGCGTCACCTTCTTCAAGGCCAGAAGGTTTGACAAGgttggtcatcaatttggtttggatcttatttttggcattttttatcctgactgtggggttgaccggctgagtaacaaaattcttcaatgcag

Basic information

species Zea mays
transcript GRMZM5G805480_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G805480_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g50640.1 (Oryza sativa), 5'ss of exon 1
GGCGGAGGCGCTTGCTGCATTGGCCCTAGAGCACACGGATCTTCTCACGACCTACAAATCCTCTTGCGTCACCTTCTTCAAGGCCAGAAGGTTTGACAAGgttggt-------catcaatttggtttggatcttatttttggcattttttatc-----ctgactgtggggtt-gaccggctgagtaacaaaattcttcaatgcag
||| ||||| ||||||||||||||| |||| || | ||||||||||   | ||||||||| |||||| ||||| | ||| ||||||| ||||||||||||||||||       | | |  | ||| ||||||||     |  ||| |||| ||     ||||  || ||||| ||     |  ||       ||   ||||||||
GGCCGAGGCTCTTGCTGCATTGGCCTTAGAACATAAGGATCTTCTCGTCAGCTACAAATCTTCTTGCATCACCATGTTCGAGGCCAGGAGGTTTGACAAGgttggttccctttctttatctcggtatggatcttggcggtttcatcttttttctggatctgagcgtagggtttgagtcttttcgtgttcttgtttggcaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148931782|gb|EC875063.2|EC875063
EST:     CCTACAAATCCTCTTGCGTCACCTTCTTCAAGGCCAGAAGGTTTGACAAG                         GTCAAGGTTGTGCGAGAGTCGATTAACCGAATGATTGAGGCGTGGAAGGAG
genomic: CCTACAAATCCTCTTGCGTCACCTTCTTCAAGGCCAGAAGGTTTGACAAGgttggtcatc ... ttcaatgcagGTCAAGGTTGTGCGAGAGTCGATTAACCGAATGATTGAGGCGTGGAAGGAG