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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTGCTGATCCCTCGACTGTGTCTTTTCGCTTTGGAGCTCGAGGAAGCTTGCCTTGCCATCCGCCACAGCAGGCTCATCCATCAGGATCTACTAATTTGgtttcgaattatgcccccattttcgtgttttgcccaaaatactcttattagggcatatattcatttggtgatttttcacatactcag

Basic information

species Zea mays
transcript GRMZM5G803610_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78107382|gb|DV525800.1|DV525800
EST:     TGCCTTGCCATCCGCCACAGCAGGCTCATCCATCAGGATCTACTAATTTG                         GTAAATGATGGCAGTCATCCTGCCTAGGACCGTCCGCAGGGCGGCGGAGGC
genomic: TGCCTTGCCATCCGCCACAGCAGGCTCATCCATCAGGATCTACTAATTTGgtttcgaatt ... acatactcagGTAAATGATGGCAGTCATCCTGCCTAGGACCGTCCGCAGGGCGGCGGAGGC
EST: gi|211168538|gb|FK982826.1|FK982826
EST:     TGCCTTGCCATCCGCCACAGCAGGCTCATCCATCAGGATCTACTAATTTG                         GTAAATGATGGCAGTCATCCTGCCTAGGACCGTCCGCA-GGC-GCGGAGGC
genomic: TGCCTTGCCATCCGCCACAGCAGGCTCATCCATCAGGATCTACTAATTTGgtttcgaatt ... acatactcagGTAAATGATGGCAGTCATCCTGCCTAGGACCGTCCGCAGGGCGGCGGAGGC
EST: gi|74232550|gb|DT640464.1|DT640464
EST:     TGCCTTGCCATCCGCCACAGCAGGCTCATCCATCAGGATCTACTAATTTG                         GTAAATGATGGCAGTCATCCTGCCTAGGACCGTCCGCAGGGCGGCGGAGGC
genomic: TGCCTTGCCATCCGCCACAGCAGGCTCATCCATCAGGATCTACTAATTTGgtttcgaatt ... acatactcagGTAAATGATGGCAGTCATCCTGCCTAGGACCGTCCGCAGGGCGGCGGAGGC
EST: gi|33467350|gb|CF244399.1|CF244399
EST:     TGCCTTGCCATCCGCCACAGCAGGCTCATCCATCAGGATCTACTAATTTG                         GTAAATGATGGCAGTCATCCTGCCTAGGACCGTCCGCAGGGCGGCGGAGGC
genomic: TGCCTTGCCATCCGCCACAGCAGGCTCATCCATCAGGATCTACTAATTTGgtttcgaatt ... acatactcagGTAAATGATGGCAGTCATCCTGCCTAGGACCGTCCGCAGGGCGGCGGAGGC
EST: gi|211168536|gb|FK982824.1|FK982824
EST:     TGCCTTGCCATCCGCCACAGCAGGCTCATCCATCAGGATCTACTAATTTG                         GTAAATGATGGCAGTCATCCTGCCTAGGACCGTCCGCAGGGCGGCGGAGGC
genomic: TGCCTTGCCATCCGCCACAGCAGGCTCATCCATCAGGATCTACTAATTTGgtttcgaatt ... acatactcagGTAAATGATGGCAGTCATCCTGCCTAGGACCGTCCGCAGGGCGGCGGAGGC
EST: gi|211168540|gb|FK982828.1|FK982828
EST:     TGCCTTGCCATCCGCCACAGCAGGCTCATCCATCAGGATCTACTAATTTG                         GTAAATGATGGCAGTCATCCTGCCTAGGACCGTCCGCAGGGCGGCGGAGGC
genomic: TGCCTTGCCATCCGCCACAGCAGGCTCATCCATCAGGATCTACTAATTTGgtttcgaatt ... acatactcagGTAAATGATGGCAGTCATCCTGCCTAGGACCGTCCGCAGGGCGGCGGAGGC
EST: gi|211170210|gb|FK982830.1|FK982830
EST:     TGCCTTGCCATCCGCCACAGCAGGCTCATCCATCAGGATCTACTAATTTG                         GTAAATGATGGCAGTCATCCTGCCTAGGACCGTCCGCAGGGCGGCGGAGGC
genomic: TGCCTTGCCATCCGCCACAGCAGGCTCATCCATCAGGATCTACTAATTTGgtttcgaatt ... acatactcagGTAAATGATGGCAGTCATCCTGCCTAGGACCGTCCGCAGGGCGGCGGAGGC
EST: gi|211168537|gb|FK982825.1|FK982825
EST:     TGCCTTGCCATCCGCCACAGCAGGCTCATCCATCAGGATCTACTAATTTG                         GTAAATGATGGCAGTCATCCTGCCTAGGACCGTCCGCAGGGCGGCGGAGGC
genomic: TGCCTTGCCATCCGCCACAGCAGGCTCATCCATCAGGATCTACTAATTTGgtttcgaatt ... acatactcagGTAAATGATGGCAGTCATCCTGCCTAGGACCGTCCGCAGGGCGGCGGAGGC
EST: gi|211168535|gb|FK982823.1|FK982823
EST:     TGCCTTGCCATCCGCCACAGCAGGCTCATCCATCAGGATCTACTAATTTG                         GTAAATGATGGCAGTCATCCTGCCTAGGACCGTCCGCAGGGCGGCGGARGC
genomic: TGCCTTGCCATCCGCCACAGCAGGCTCATCCATCAGGATCTACTAATTTGgtttcgaatt ... acatactcagGTAAATGATGGCAGTCATCCTGCCTAGGACCGTCCGCAGGGCGGCGGAGGC
EST: gi|211168541|gb|FK982829.1|FK982829
EST:     TGCCTTGCCATCCGCCACAGCAGGCTCATCCATCAGGATCTACTAATTTG                         GTAAATGATGGCAGTCATCCTGCCTA
genomic: TGCCTTGCCATCCGCCACAGCAGGCTCATCCATCAGGATCTACTAATTTGgtttcgaatt ... acatactcagGTAAATGATGGCAGTCATCCTGCCTA