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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGCGTACGCGCTCTCGTGGCGACGACTGGGTGATCGCCGCCGCCGCCGCCGCCACCACGCACCACCAGGCCTTCACCGGCGACAAACACCACCAACAGgtaagcccacgcctcctcttcagttcctgttatacgaaacggagcatccgaaccctaacatctatttatattcggatctgatctaatcacaagtgtgtac...

Basic information

species Zea mays
transcript GRMZM5G801369_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149075694|gb|EE164238.2|EE164238
EST:     ACCACGCACCACCAGGCCTTCACCGGCGACAAACACCACCAACAG                         ACACAAGTGCTTCAGTCATTATAGTGCCAGTACCATTCTGCCAGCGAGTTC
genomic: ACCACGCACCACCAGGCCTTCACCGGCGACAAACACCACCAACAGgtaagcccac ... tataacacagACACAAGTGCTTCAGTCATTATAGTGCCAGTACCATTCTGCCAGCGAGTTC
EST: gi|71301944|gb|DR787048.1|DR787048
EST:     ACCACGCACCACCAGGCCTTCACCGGCGACAAACACCACCAACAG                         ACACAAGTGCTTCAGTCATTATAGTGCCAGTACCATTCTGCCAGCGAGTTC
genomic: ACCACGCACCACCAGGCCTTCACCGGCGACAAACACCACCAACAGgtaagcccac ... tataacacagACACAAGTGCTTCAGTCATTATAGTGCCAGTACCATTCTGCCAGCGAGTTC