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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAACTTCGAAGAGGATACATGGACGATTTTGAAGGATGCTATCACAGCTATTTTTCTCAAGCAGAAACTTTCTTGTGATGTTGAGAAACTCTATCAGgttatacttctgttgctgacactgtaatgttcatgctcccacattagcatttgagtacgttatacttgtatttgtaccacag

Basic information

species Zea mays
transcript GRMZM2G704093_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G704093_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g57290.1 (Oryza sativa), 5'ss of exon 2
AAAAAACTTCGAAGAGGATACATGGACGATTTTGAAGGATGCTATCACAGCTATTTTTCTCAAGCAGAAACTTTCTTGTGATGTTGAGAAACTCTATCAGgttatacttctgttgctgacactgtaatgttcatgctcccacattagcatttgagtacgttatacttgtatttgtaccacag
|| |||||| || |||||||||||| | |||||||| |||||||| |||||||| ||||| || ||||||||||| || |||||||| ||||| || ||||| ||  || | |||||   | | || |  | ||| |||||| ||||   || || || || |  |  |   | ||      
AACAAACTTTGAGGAGGATACATGGGCTATTTTGAAAGATGCTATTACAGCTATATTTCTAAAACAGAAACTTTCGTGCGATGTTGAAAAACTTTACCAGgtaatttttatattgcttctattctatt--tgatgatcccactttagttatttagaac-ttgttttcttcactatag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88757719|gb|DY541860.1|DY541860
EST:     CTANNNNNNNCAAGCAGAAACTTTCTTGTGATGTTGAGAAACTCTATCAG                         GCTGCTGGTGATCTTTGTCTACCCAAGCTAGGGGCAAACCTATACGAACGA
genomic: CTATTTTTCTCAAGCAGAAACTTTCTTGTGATGTTGAGAAACTCTATCAGgttatacttc ... tgtaccacagGCTGCTGGTGATCTTTGTCTACACAAGCTAGGGGCAAACCTATACGAACGA