1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CGGCGGGGAGGGAGACAGATGCGGGAGGCCCACCGCGGGGTCGCCGGACCAGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAGgtcctccatctcgctcgcagccagggggccgccccgctgatgcttgttcccaccggttttcgctgttctgatggggggttctgaggccatttctctgtgt...
species | Zea mays |
transcript | GRMZM2G701689_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAG GATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCTEST: gi|87152637|gb|DY397426.1|DY397426
genomic: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAGgtcctccatc ... tgttttgcagGATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCT
EST: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAG GATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCTEST: gi|211513604|gb|FL043440.1|FL043440
genomic: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAGgtcctccatc ... tgttttgcagGATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCT
EST: ATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCG-CGGGTTTCCGAG GATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCEST: gi|211366529|gb|FL297812.1|FL297812
genomic: ATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGG-TT-CGAGgtcctccatc ... tgttttgcagGATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACC
EST: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAG GATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCTEST: gi|211366525|gb|FL297808.1|FL297808
genomic: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAGgtcctccatc ... tgttttgcagGATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCT
EST: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAG GATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCTEST: gi|87152122|gb|DY396911.1|DY396911
genomic: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAGgtcctccatc ... tgttttgcagGATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCT
EST: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAG GATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCTEST: gi|211366538|gb|FL297821.1|FL297821
genomic: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAGgtcctccatc ... tgttttgcagGATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCT
EST: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAG GATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCTEST: gi|19437165|gb|BM953575.1|BM953575
genomic: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAGgtcctccatc ... tgttttgcagGATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCT
EST: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAG GATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCTEST: gi|211366527|gb|FL297810.1|FL297810
genomic: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAGgtcctccatc ... tgttttgcagGATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCT
EST: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAG GATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCTEST: gi|211366530|gb|FL297813.1|FL297813
genomic: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAGgtcctccatc ... tgttttgcagGATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCT
EST: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAG GATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCTEST: gi|211366524|gb|FL297807.1|FL297807
genomic: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAGgtcctccatc ... tgttttgcagGATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCT
EST: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAG GATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCTEST: gi|71312702|gb|DR792875.1|DR792875
genomic: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAGgtcctccatc ... tgttttgcagGATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCT
EST: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAG GATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCTEST: gi|211366536|gb|FL297819.1|FL297819
genomic: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAGgtcctccatc ... tgttttgcagGATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCT
EST: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAG GATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCTEST: gi|211366537|gb|FL297820.1|FL297820
genomic: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAGgtcctccatc ... tgttttgcagGATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCT
EST: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAG GATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCTEST: gi|211369184|gb|FL297822.1|FL297822
genomic: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAGgtcctccatc ... tgttttgcagGATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCT
EST: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAG GATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCTEST: gi|211363879|gb|FL297806.1|FL297806
genomic: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAGgtcctccatc ... tgttttgcagGATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCT
EST: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAG GATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCTEST: gi|211363877|gb|FL297804.1|FL297804
genomic: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAGgtcctccatc ... tgttttgcagGATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCT
EST: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAG GATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCTEST: gi|211366531|gb|FL297814.1|FL297814
genomic: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAGgtcctccatc ... tgttttgcagGATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCT
EST: AGATGGACACGCCGGATAGGCCTCGCGCCGGCGCCGGCGCCGGGTTCGAG GATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCTEST: gi|211366532|gb|FL297815.1|FL297815
genomic: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAGgtcctccatc ... tgttttgcagGATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCT
EST: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAG GATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCTEST: gi|211366526|gb|FL297809.1|FL297809
genomic: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAGgtcctccatc ... tgttttgcagGATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCT
EST: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAG GATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCTEST: gi|22491113|gb|BU051036.1|BU051036
genomic: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAGgtcctccatc ... tgttttgcagGATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCT
EST: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAG GATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCTEST: gi|22490856|gb|BU050779.1|BU050779
genomic: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAGgtcctccatc ... tgttttgcagGATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCT
EST: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAG GATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCT
genomic: AGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAGgtcctccatc ... tgttttgcagGATTCTCCTGTGTTCAATTTCATCAACAATCTCTCGCCTATACCACCACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCGGGGAGGGAGACAGATGCGGGAGGCCCACCGCGGGGTCGCCGGACCAGATGGACACGCCGGATAGGCCCCGCGCCGGCGCCGGCGCCGGGTTCGAGgtcctccatctcgctcgcagccagggggccgccccgctgatgcttgttcccaccggttttcgctgttctgatggggggttctgaggccatttctctgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcgctcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgcccc