1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
CGGAAAGAAGCCCGGCCGGGTCGGAAGGGGAGCAGTTCTCGCCTTCTCGGGGAGGTCGCCAGCGgtaacggaaaaaccctcgtcccctccccccctcctctcacccggtccctgctggtcgaaatctagggttttggcggggtttggatcgcctgttctttgac...
species | Zea mays |
transcript | GRMZM2G589579_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCGGGTCGGAAGGGGAGCAGTTCTCGCCTTCTCGGGGAGGTCGCCAGCG GGTTGGGCAGAGGCTTTGCAGCTTTTGGGTCAGACGCAGTGTTCTCEST: gi|32907774|gb|CF012587.1|CF012587
genomic: GCCGGGTCGGAAGGGGAGCAGTTCTCGCCTTCTCGGGGAGGTCGCCAGCGgtaacggaaa ... tgacgtgcagGGTTGGGCAGAGGCTTTGCAGCTTTTGGGTCAGACGCAGTGTTCTC
EST: CGGGTCGGAAGGGGAGCAGTTCTCTCGCCTTCTCGGGGAGGTCGCCAGCG GGTTGGGCAGAGGCTTTGCAGCTTTTGGGTCAGACGCAGTGTTCTCEST: gi|67031461|gb|CO460210.1|CO460210
genomic: CGGGTCGGAAGGGGAGCAG-T-TCTCGCCTTCTCGGGGAGGTCGCCAGCGgtaacggaaa ... tgacgtgcagGGTTGGGCAGAGGCTTTGCAGCTTTTGGGTCAGACGCAGTGTTCTC
EST: GGGAGCAGTTCTCGCCTTCTCGGGGAGGTCGCCAGCG GGTTGGGCAGAGGCTTTGCAGCTTTTGGGTCAGACGCAGTGTTCTCEST: gi|4609522|gb|AI600361.1|AI600361
genomic: GGGAGCAGTTCTCGCCTTCTCGGGGAGGTCGCCAGCGgtaacggaaa ... tgacgtgcagGGTTGGGCAGAGGCTTTGCAGCTTTTGGGTCAGACGCAGTGTTCTC
EST: CGGAAGGGGAGCAGTTCTCGCCTTCTCGGGGAGGTCGCCAGCG GGTTGGGCAGAGGCTTTGCAGCTTTTGGGTCAGACGCAGTGTTCTC
genomic: CGGAAGGGGAGCAGTTCTCGCCTTCTCGGGGAGGTCGCCAGCGgtaacggaaa ... tgacgtgcagGGTTGGGCAGAGGCTTTGCAGCTTTTGGGTCAGACGCAGTGTTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGAAAGAAGCCCGGCCGGGTCGGAAGGGGAGCAGTTCTCGCCTTCTCGGGGAGGTCGCCAGCGgtaacggaaaaaccctcgtcccctccccccctcctctcacccggtccctgctggtcgaaatctagggttttggcggggtttggatcgcctgttctttgac
- - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccggtcc